View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16626_high_23 (Length: 260)
Name: NF16626_high_23
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16626_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 9002089 - 9002317
Alignment:
| Q |
14 |
atgaacatgtaatgatattaagtaaaagacgtctttcaccttacatatcaattttgtaggattaagttagactcattccaaattccattgtgctatcaaa |
113 |
Q |
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| T |
9002089 |
atgaacatgtaatgatattaagtaaaagacgtctttcaccttacataccaattttatagggttaagttagactcattccaaattccattatgctatcaaa |
9002188 |
T |
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| Q |
114 |
gtctatccaacatttattggaccatgcaccggtcccgaacatgaggggtgtgtcgagagttcatcacttcatcactgaatgaaatgtgattttaaaatgt |
213 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
9002189 |
gtctatccaacgtttattggaccatgcaccggtcccgaacatgaggggtgtgtcgagagttcatcacttcattacggaatgaaatgtgattttaaaatgt |
9002288 |
T |
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| Q |
214 |
gtttataacttaaaaacactgtccacctt |
242 |
Q |
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||| ||||||||||||||||| ||||||| |
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| T |
9002289 |
gttcataacttaaaaacactgcccacctt |
9002317 |
T |
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