View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16626_high_25 (Length: 235)
Name: NF16626_high_25
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16626_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 2672373 - 2672571
Alignment:
| Q |
21 |
aatctcactctcatcaaccgtatcatcataagctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagggcaatg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2672373 |
aatctcactctcatcaaccgtatcatcataagctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagggcaatg |
2672472 |
T |
|
| Q |
121 |
tgtttcctcaatgacctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcctatg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2672473 |
tgtttcctcaatgacctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcctatg |
2672571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 2569002 - 2569196
Alignment:
| Q |
25 |
tcactctcatcaaccgtatcatcataagctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagggcaatgtgtt |
124 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2569002 |
tcactctcatcaaccttatcatcgtaagctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagtgcaatgtgtt |
2569101 |
T |
|
| Q |
125 |
tcctcaatgacctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcctatg |
219 |
Q |
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||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |
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| T |
2569102 |
cccttaatgaccttagattatatgtctttatgtctctaccatcaattgtcactatccctttaagtggatcatagaatctttcaataagtcctatg |
2569196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 2596557 - 2596754
Alignment:
| Q |
21 |
aatctcactctcatcaaccgtatcatcataagctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagggcaatg |
120 |
Q |
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|
|||||||||||||||||| |||||||||| ||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
2596557 |
aatctcactctcatcaactttatcatcatatgctccatatacaatattttcttttatggtaccaccaaacaatgttggttcttgactcacaagtgcaata |
2596656 |
T |
|
| Q |
121 |
tgtttcctcaatgacctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcctat |
218 |
Q |
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|||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
2596657 |
tgtttccttaatgatcgtagattatatgtctttatgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctctcaattagtcctat |
2596754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 2440326 - 2440128
Alignment:
| Q |
21 |
aatctcactctcatcaaccgtatcatcataagctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagggcaatg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
2440326 |
aatctcactctcatcaactttatcatcatatgctccatatacaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaata |
2440227 |
T |
|
| Q |
121 |
tgtttcctcaatgacctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcctatg |
219 |
Q |
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|||||||| ||||| | |||||||| || |||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2440226 |
tgtttccttaatgatcgtagattataagtttttatgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcctatg |
2440128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 25 - 219
Target Start/End: Complemental strand, 2592268 - 2592074
Alignment:
| Q |
25 |
tcactctcatcaaccgtatcatcataagctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagggcaatgtgtt |
124 |
Q |
| |
|
||||| ||||||||| |||||||||| | |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2592268 |
tcactttcatcaaccttatcatcatatgatccatatgcaatattttctttgatggtaccactaaacaatgttggttcttgactcacaagtgcaatgtgtt |
2592169 |
T |
|
| Q |
125 |
tcctcaatgacctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcctatg |
219 |
Q |
| |
|
|||| | |||||| |||||||| | |||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
2592168 |
tccttagtgaccttagattataaatttttatgtccctaccatcaattgtcactatccctttaagtggatcatagaacctctcaattagtcctatg |
2592074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 25 - 219
Target Start/End: Complemental strand, 2623812 - 2623618
Alignment:
| Q |
25 |
tcactctcatcaaccgtatcatcataagctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagggcaatgtgtt |
124 |
Q |
| |
|
||||||||||||||| |||| |||| | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
2623812 |
tcactctcatcaacctgatcaccatatgatccatatgcaatattttcttttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatgtgtt |
2623713 |
T |
|
| Q |
125 |
tcctcaatgacctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcctatg |
219 |
Q |
| |
|
|||| |||||||| |||||||| || ||||||||||| || ||||||||||||||||||| |||||| |||||||| |||||||||||||||||| |
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| T |
2623712 |
tccttaatgaccttagattataagtttttatgtctctgccatcaattgtcactatcccttcaagtggatcatagaacctctcaattagtcctatg |
2623618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 2641213 - 2641411
Alignment:
| Q |
21 |
aatctcactctcatcaaccgtatcatcataagctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagggcaatg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||| |
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| T |
2641213 |
aatctcactctcatcaactttatcatcataggctccgtatgcaatattttcccttatggtaccaccaaacagtgttggttcttgacttacaagtgcaatg |
2641312 |
T |
|
| Q |
121 |
tgtttcctcaatgacctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcctatg |
219 |
Q |
| |
|
|||||||| || ||||| |||||||| | |||||| ||| ||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
2641313 |
tgtttccttaacgaccttagattataagactttatatcttcaccatcaattgtcactatccctttaattggatcatagaatctctcaattagtcctatg |
2641411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 2451048 - 2450853
Alignment:
| Q |
21 |
aatctcactctcatcaaccgtatcatcataagctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagggcaatg |
120 |
Q |
| |
|
||||||||||||||||||| |||||| | ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| | ||| |
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| T |
2451048 |
aatctcactctcatcaaccttatcat---atgctccatatgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaata |
2450952 |
T |
|
| Q |
121 |
tgtttcctcaatgacctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcctatg |
219 |
Q |
| |
|
|| ||||| |||||||| |||||||| | |||||| || ||||| ||||| |||||||||||||| | ||| ||||| ||||||||||||||||||||| |
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| T |
2450951 |
tgcttccttaatgaccttagattataagactttatatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
2450853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 219
Target Start/End: Original strand, 17870445 - 17870610
Alignment:
| Q |
54 |
tccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagggcaatgtgtttcctcaatgacctgagattatatgtcttt |
153 |
Q |
| |
|
|||||||||||| || || |||||||| ||| | | ||||||||||||||| |||||||| || |||||||| || | |||| | || ||||||| ||| |
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| T |
17870445 |
tccatatgcaatgttgtctcttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttatatgatttt |
17870544 |
T |
|
| Q |
154 |
atgtctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcctatg |
219 |
Q |
| |
|
|||| | |||| || |||||||| | ||||| | ||| |||||||||||||| |||| ||||||| |
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| T |
17870545 |
atgtttgtaccatctattgtcacatttccttttattggatcatagaatctctctattaatcctatg |
17870610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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