View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16626_high_5 (Length: 426)
Name: NF16626_high_5
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16626_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 4925096 - 4924702
Alignment:
| Q |
18 |
ctatgaaatgtatttataacaatttttgtatttggtttagtgtacccattgttatcatgtaaatagttttttacttaataaaagaataatatatgatttg |
117 |
Q |
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| T |
4925096 |
ctatgaaatgtatttataacaatttttgtatttggtttagtgtacccattgttatcatgtatatagttttttacttaataaaagaataatatatgatttg |
4924997 |
T |
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| Q |
118 |
cagtactatgccaaacacaaaggtcaacacaagaagtaggtagatctcagaaactcgatctaagtcaacatttcaagatgggtaatggtggtattattct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4924996 |
cagtactatgccaaacacaaaggtcaacacaagaagtaggtagatctcagaaactcgatctaagtcaacatttcaagatgggtaatggtggtattattct |
4924897 |
T |
|
| Q |
218 |
atcaagtagttacaacgagcagcatcataatcctcagtatttccctactctcctgaagccatgcccttccttctccttatcacgtaattattcacataca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4924896 |
atcaagtagttacaacgagcagcatcataatcctcagtatttcccaactctcctgaagccatgcccttccttctccttatcacgtaattattcacataca |
4924797 |
T |
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| Q |
318 |
aactcatctcatcatgatgattcaaggtaattaatcctacattcctttcatcttgttattataataatcatttttgcaattaatctctctctctg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4924796 |
aactcatctcatcatgatgattcaaggtaattaatcctacattcctttcatcttgttattataataatcatttttgcaattaatctctctctctg |
4924702 |
T |
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