View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16626_low_1 (Length: 543)
Name: NF16626_low_1
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16626_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Complemental strand, 25524677 - 25524157
Alignment:
| Q |
18 |
cactctgtttgtatgaaaggtctctttggatttactaattttgggagtatctgggctcttttggtatatgcactttatagagctcttttagtactctatg |
117 |
Q |
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| T |
25524677 |
cactctgtttgtatgaaaggcctctttggatttactaattttgggagtatctgggctcttttggtatatgcactttatagagctcttttagtactctatg |
25524578 |
T |
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| Q |
118 |
gatatatttttggcttaactttttggttattttgtaa-ttatccttttgatgcatttagactacgcggggtactactctatggattgattttgcctactg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25524577 |
gatatatttttggcttaactttttggttattttgtaaattatctttttgatgcatttagactacgcggggtactactctatggattgattttgcctactg |
25524478 |
T |
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| Q |
217 |
cttgttactcaatggagaggttgaaacaacagagagatgatccccacgtttaccttccattatttgtctcatgtgaagacaacattgatagcacgttttg |
316 |
Q |
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| T |
25524477 |
cttgttactcaatggagagattgaaacaacagagagatgatccccacgtttaccttccattatttgcctcatgtgatgacaacattgatagcacgttttg |
25524378 |
T |
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| Q |
317 |
tgtgtttgtttcgttatgcaccctgctttgaagttaataatgctttttggtgccagtttagttatttgcattgttcccatgttgttttttctttggcctt |
416 |
Q |
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| T |
25524377 |
tgtgtttgtttcgttatgcaccctgctttgaagttgataatgctttttggtgccagtttagttatttacattgttcccatgttgttttttctttggcctt |
25524278 |
T |
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| Q |
417 |
gtttacgattgttttaagtttctgcatgttgcgttttaagtattagtagcttgtttatgcaagtttagttgttttaaaatttgaaaggagtttgcaaaat |
516 |
Q |
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| T |
25524277 |
gtttacgattgttttaagtttctgcatgttgcgttttaagtattagtagcttgtttatgcaagtttagttgttttaaaatttgaaaggagtttgcaaaat |
25524178 |
T |
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| Q |
517 |
ttgaaacctgattcttctcac |
537 |
Q |
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| T |
25524177 |
ttgaaacctgattcttctcac |
25524157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 25540251 - 25540172
Alignment:
| Q |
18 |
cactctgtttgtatgaaaggtctctttggatttactaattttgggagtatctgggctcttttggtatatgcactttatag |
97 |
Q |
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| T |
25540251 |
cactctttttgtatgaagggcctatttggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatag |
25540172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 316
Target Start/End: Complemental strand, 25525864 - 25525775
Alignment:
| Q |
230 |
ggagaggttgaaacaacagagagatgatcccca---cgtttaccttccattatttgtctcatgtgaagacaacattgatagcacgttttg |
316 |
Q |
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| T |
25525864 |
ggagaggttgaaacaatagagagatgatcctcatgtagtttaccttcctttatttgtttcacgtgaagagaagagtgatagcaggttttg |
25525775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 25520178 - 25520133
Alignment:
| Q |
402 |
tttttctttggccttgtttacgattgttttaagtttctgcatgttg |
447 |
Q |
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| T |
25520178 |
tttttcttcggccttgtttatgcttgttttaattttctgcatgttg |
25520133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 25525701 - 25525657
Alignment:
| Q |
402 |
tttttctttggccttgtttacgattgttttaagtttctgcatgtt |
446 |
Q |
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| T |
25525701 |
tttttctttggccttgttcatgcttgttttatgtttctgcatgtt |
25525657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 26929995 - 26930088
Alignment:
| Q |
230 |
ggagaggttgaaacaacagagagatgatccccacg----tttaccttccattatttgtctcatgtgaagacaacattgatagcacgttttgtgt |
319 |
Q |
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||||||||| ||||||||||||||||||||| | | |||||||| | |||||||||||||||||| ||| || | ||||| ||||||||| |
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| T |
26929995 |
ggagaggttaaaacaacagagagatgatccctaagttaatttaccttactttatttgtctcatgtgaacacatcagtagtagcaggttttgtgt |
26930088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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