View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16626_low_16 (Length: 327)
Name: NF16626_low_16
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16626_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 44541728 - 44541407
Alignment:
| Q |
1 |
tgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatctttcccaactttgtctt |
100 |
Q |
| |
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||||||||||||| |||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44541728 |
tgtttccgaccatgggaaagtattttttggccatcagattaaagagaatcaccaatcttattatagtatgcacacactatatctttcccaactttgtctt |
44541629 |
T |
|
| Q |
101 |
caacctcacaatcatttctctctccttataactcactcacccaccacaagctgcctaaattgcaggatcaaaccaactatggataatcatttcaacagct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
44541628 |
caacctcacaatcatttctctctccttataactcactcacctaccacaagctgcctaaattgcaagatcaaaccaactatggat-atcatttcaacagct |
44541530 |
T |
|
| Q |
201 |
tgaatcacacaaagtgctcccaacattttattctctctttccatannnnnnnaattcaagtttcagtgacaaatgggtcacta-ttttctctaaattgac |
299 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44541529 |
tgaatcacacaaagtgctcctaacattttattctctctttccatatttttttaattcaagtttcagtgacaaatgggtcactatttttctctaaattgac |
44541430 |
T |
|
| Q |
300 |
cattgattttagtctgtgctcct |
322 |
Q |
| |
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||||||||||||| |||| |||| |
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| T |
44541429 |
cattgattttagtttgtgttcct |
44541407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 2 - 322
Target Start/End: Complemental strand, 473063 - 472748
Alignment:
| Q |
2 |
gtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatctttcccaactttgtcttc |
101 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||||||| || || | |||||||||||||||| | |||||||||||||||||| |||||||||||||| |
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| T |
473063 |
gtttcccaccatagaaaagtattttttagccatcagattaaagaggaccactgatcttattataatctgcacacactatatcttttccaactttgtcttc |
472964 |
T |
|
| Q |
102 |
aacctcacaatcatttctctctcctt-ataactcactcacccaccacaagctgcctaaattgcaggatcaaaccaactatggataatcatttcaacag-c |
199 |
Q |
| |
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|| || ||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||| || || |||||||||| | |
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| T |
472963 |
aa-ctaacagccatttctctctccttcataactcactcacccaccaccagctgcctaaattgcaagatcaaaccaactatgaat-attatttcaacagcc |
472866 |
T |
|
| Q |
200 |
ttgaatcacacaaagtgctcccaacattttattctctctttccatannnnnnnaattcaagtttcagtgacaaatgggtcacta-ttttctctaaattga |
298 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
472865 |
ttgaatcacac--agtgctctcaacattttattctctct----atatttttttaattcaagtttcagtgacaaatgggtcactatttttctctaaattga |
472772 |
T |
|
| Q |
299 |
ccattgattttagtctgtgctcct |
322 |
Q |
| |
|
||||| |||||||| |||| |||| |
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|
| T |
472771 |
ccattaattttagtttgtgttcct |
472748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 36272567 - 36272453
Alignment:
| Q |
1 |
tgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatctttcccaactttgtctt |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||| |||| || || || ||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
36272567 |
tgtttcccaccatgggaaagtattttttggccatctgattaaagaggattactgatcttattatagtctgcacacactatatctttctcaactttgtctt |
36272468 |
T |
|
| Q |
101 |
caacctcacaatcat |
115 |
Q |
| |
|
||||||||| ||||| |
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| T |
36272467 |
caacctcactatcat |
36272453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 6768136 - 6768024
Alignment:
| Q |
3 |
tttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatctttcccaactttgtcttca |
102 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||| |||| || || || ||| ||||||||||||| |||||||| |||||||||| |||||||||||||| |
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|
| T |
6768136 |
tttcccaccatgggaaagtattttttggccatctgattaaagaggattactaatcttattatagtctgcacacattatatctttctcaactttgtcttca |
6768037 |
T |
|
| Q |
103 |
acctcacaatcat |
115 |
Q |
| |
|
||||||| ||||| |
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|
| T |
6768036 |
acctcactatcat |
6768024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 37422470 - 37422544
Alignment:
| Q |
48 |
atcactgatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcacaatcatttctctc |
122 |
Q |
| |
|
||||||| |||||||||||| |||| ||||| ||||||||| ||||| ||||||||||||| | ||| |||||| |
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|
| T |
37422470 |
atcactggtcttattatagtctgcaaacactgtatctttccagactttatcttcaacctcactaccatctctctc |
37422544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 23462441 - 23462547
Alignment:
| Q |
9 |
accataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctca |
108 |
Q |
| |
|
||||| |||||||||||||| |||||| || | || || |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
23462441 |
accatgggaaagtattttttggccatctgactaaagaggatcactgatcttattatagtctgcacacactatatctttctcaactttgtcttcaacctca |
23462540 |
T |
|
| Q |
109 |
caatcat |
115 |
Q |
| |
|
| ||||| |
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| T |
23462541 |
ctatcat |
23462547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 23593960 - 23593852
Alignment:
| Q |
1 |
tgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatctttcccaactttgtctt |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||| || | ||| | || || ||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
23593960 |
tgtttcccaccatgggaaagtattttttggcggttagactaaagaggatcactgattttattatagtatgcatacactatatctttcccaactttgtctt |
23593861 |
T |
|
| Q |
101 |
caacctcac |
109 |
Q |
| |
|
||||||||| |
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|
| T |
23593860 |
caacctcac |
23593852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 8384003 - 8383930
Alignment:
| Q |
36 |
agatttaaaagaatcactgatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcac |
109 |
Q |
| |
|
|||||||| || ||| |||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
8384003 |
agatttaagaggatcgttgatcttattatggtctgcacacactatatatttcccaactttgtcttcaacctcac |
8383930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 8383236 - 8383292
Alignment:
| Q |
53 |
tgatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcac |
109 |
Q |
| |
|
||||||||||||| | | ||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
8383236 |
tgatcttattataatctacacacactatatctttccccactttgtcatcaacctcac |
8383292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 6013026 - 6013117
Alignment:
| Q |
31 |
ccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcacaatcatttctctc |
122 |
Q |
| |
|
|||| ||||| || || |||||| ||||||||||||||||| |||| ||||||||| ||||| ||||||||||||| | ||| |||||| |
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|
| T |
6013026 |
ccattagattaaagaggatcactagtcttattatagtatgcaaacacggtatctttccagactttatcttcaacctcactaccatctctctc |
6013117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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