View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16626_low_22 (Length: 268)
Name: NF16626_low_22
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16626_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 28 - 260
Target Start/End: Complemental strand, 43372103 - 43371872
Alignment:
| Q |
28 |
cgatctttaacgctctcaccaattttgtccaagataggaaactggagttttgacgttttggaaatttgtccccatctcttttgtgccattccgcttcccc |
127 |
Q |
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| T |
43372103 |
cgatctttaacgctctcaccaattttgtccaagataggaaactggagttttgac-ttttggaaatttgtccccatctcttttgtgccatcccgcttcccc |
43372005 |
T |
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| Q |
128 |
tcttcacattccttaaaatgcatgtctctacttacaataattctaccactttgtagccaaaaattatataagcttttgcaactgagttgtagccattata |
227 |
Q |
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| T |
43372004 |
tcttcacattccttaaaatgcatgtctctacttacaataattctaccactttgtagccaaaaattatataagcttttgcaactgagttgtagccattata |
43371905 |
T |
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| Q |
228 |
attctcgaaagagctcttttatctattcatctc |
260 |
Q |
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| T |
43371904 |
attctcgaaagagctcttttatctatttatctc |
43371872 |
T |
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Back To:
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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 32527503 - 32527322
Alignment:
| Q |
41 |
tctcaccaattttgtccaagataggaaactggagttttgacgttttggaaatttgtccccatctcttttgtgccattccgcttcccctcttcacattcct |
140 |
Q |
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| T |
32527503 |
tctcatcaattttttctaaggtaggaacctggagttttggagttttggaaattac-ctccatctcctttgtgtcatcccagttccactcttcatcttcca |
32527405 |
T |
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| Q |
141 |
taaaatgcatgtctctacttacaataattctaccactttgtagc-caaaaattatataagcttttgcaactgagttgtagcca |
222 |
Q |
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| T |
32527404 |
taaaatgcacatctctacttacaataattttaccattttgtggctggaaaattttataagcttttgcaacggagctgtagcca |
32527322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 28391900 - 28391718
Alignment:
| Q |
41 |
tctcaccaattttgtccaagataggaaactggagttttgacgttttggaaatttgtccccatctc-ttttgtgccattccgcttcccctcttcacattcc |
139 |
Q |
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||||| ||||||| || ||| |||||| ||||||||||| |||||| ||||| | ||||||| ||||||| ||| || |||| ||||||| |||| |
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| T |
28391900 |
tctcatcaattttttctaaggtaggaacctggagttttggagttttgaaaattac-ctccatctccttttgtgtcatcccagttccactcttcatcttcc |
28391802 |
T |
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| Q |
140 |
ttaaaatgcatgtctctacttacaataattctaccactttgtag-ccaaaaattatataagcttttgcaactgagttgtagcca |
222 |
Q |
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| T |
28391801 |
ataaaatgcacatctctacttacaataattttaccattttgtggttggaaaattttataagcttttgcaacggagctgtagcca |
28391718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 6837132 - 6837257
Alignment:
| Q |
99 |
ccatctcttttgtgccattccgcttcccctcttcacattccttaaaatgcatgtctctacttacaataattctaccactttgtagc--caaaaattatat |
196 |
Q |
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||||||| |||||| ||| || |||| ||||||| ||| ||||||||| |||||||||||||||||| ||||| ||| | || |||| || ||| |
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| T |
6837132 |
ccatctcatttgtgtcatcccagttccactcttcatcttctataaaatgcacatctctacttacaataattttaccattttatggctggaaaatttttat |
6837231 |
T |
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| Q |
197 |
aagcttttgcaactgagttgtagcca |
222 |
Q |
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|||||||||||| |||||||||||| |
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| T |
6837232 |
aagcttttgcaatggagttgtagcca |
6837257 |
T |
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