View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16626_low_23 (Length: 264)
Name: NF16626_low_23
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16626_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 30043969 - 30043734
Alignment:
| Q |
12 |
atgaacaagctgctaatgtaaacaaaactcaaaaagattttgtagacatacttctttcaattatgcaccaaaccattgatgtcgagggtgaacagaattt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| | |
|
|
| T |
30043969 |
atgaacaagctgctaatgtaaacaaaactcaaaaagattttgtagacatacttctttcaattatgcaccaaaccattgatattgagggtgaacaaaatct |
30043870 |
T |
|
| Q |
112 |
cgtcattgatcgaactaacatcaaggctattttgctcgacatgatagtggcagctattgatacatctgctacctcgattgaatgggctttatctgaactt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30043869 |
cgtcattgatcgaactaacatcaaggctattttgctcgacatgatagtggcagcaattgatacatctgctacctcgattgaatgggctttatctgaactt |
30043770 |
T |
|
| Q |
212 |
ttaagacatccaagagtgatgaaaaaacttcaagat |
247 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30043769 |
ttaagacatccaagagtgatgaaaaagcttcaagat |
30043734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 29995237 - 29995475
Alignment:
| Q |
12 |
atgaacaagctgctaatgtaaacaaaactcaa---aaagattttgtagacatacttctttcaattatgcaccaaaccattgatgtcgagggtgaacagaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29995237 |
atgaacaagctgctaatgtaaacaaaactcatcataaagattttgtagacatacttctttcaattatgcaccaaaccattgatgtcgagggtgaacaaaa |
29995336 |
T |
|
| Q |
109 |
tttcgtcattgatcgaactaacatcaaggctattttgctcgacatgatagtggcagctattgatacatctgctacctcgattgaatgggctttatctgaa |
208 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29995337 |
tctcgtcattgatcgaactaacatcaaggctattttgctcgacatgatagtggcagcaatcgatacatctgctacctcgattgaatgggctttatctgaa |
29995436 |
T |
|
| Q |
209 |
cttttaagacatccaagagtgatgaaaaaacttcaagat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29995437 |
cttttaagacatccaagagtgatgaaaaagcttcaagat |
29995475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 30068486 - 30068251
Alignment:
| Q |
16 |
acaagctgctaatgtaaacaaaactcaa---aaagattttgtagacatacttctttcaattatgcaccaaaccattgatgtcgagggtgaacagaatttc |
112 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || |
|
|
| T |
30068486 |
acaagctgctaatgtaaacaaaactcatcataaagatttcgtagacatacttctttcaattatgcatcaaaccattgatgtcgagggtgaacaaaatctc |
30068387 |
T |
|
| Q |
113 |
gtcattgatcgaactaacatcaaggctattttgctcgacatgatagtggcagctattgatacatctgctacctcga-ttgaatgggctttatctgaactt |
211 |
Q |
| |
|
|| ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| |||| |
|
|
| T |
30068386 |
gtaattgatcgatctaacatcaaagctattttgctcgacatgatagtggcagcaattgatacatctgctacctcgattttaatgggctttatctgcactt |
30068287 |
T |
|
| Q |
212 |
ttaagacatccaagagtgatgaaaaaacttcaagat |
247 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
30068286 |
ttaaggcatccaagagtgatgaaaattcttcaagat |
30068251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 45 - 247
Target Start/End: Original strand, 30007062 - 30007264
Alignment:
| Q |
45 |
aagattttgtagacatacttctttcaattatgcaccaaaccattgatgtcgagggtgaacagaatttcgtcattgatcgaactaacatcaaggctatttt |
144 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30007062 |
aagactttgtagacatacttctttcaattatgcaccaaaccattgatgtcgagggtgaacaaaatctcgtcattgatcgaactaacatcaaggctatttt |
30007161 |
T |
|
| Q |
145 |
gctcgacatgatagtggcagctattgatacatctgctacctcgattgaatgggctttatctgaacttttaagacatccaagagtgatgaaaaaacttcaa |
244 |
Q |
| |
|
|||||||||||||| |||| | || |||||||||||||| ||||||| |||||||||||||||||| |||| ||| ||||||||||||||| |||||| |
|
|
| T |
30007162 |
gctcgacatgatagcggcatcagttcatacatctgctaccacgattgagtgggctttatctgaacttctaaggcattcaagagtgatgaaaattcttcaa |
30007261 |
T |
|
| Q |
245 |
gat |
247 |
Q |
| |
|
||| |
|
|
| T |
30007262 |
gat |
30007264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 44 - 247
Target Start/End: Original strand, 30000945 - 30001148
Alignment:
| Q |
44 |
aaagattttgtagacatacttctttcaattatgcaccaaaccattgatgtcgagggtgaacagaatttcgtcattgatcgaactaacatcaaggctattt |
143 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||| ||| || |||||||||||||||| | |||||||||||||| |
|
|
| T |
30000945 |
aaagattttgtagacacagttctttcaattatgcaccaaaccattgatgttgagggtggacaagatctcgtcattgatcgaacgatcatcaaggctattt |
30001044 |
T |
|
| Q |
144 |
tgctcgacatgatagtggcagctattgatacatctgctacctcgattgaatgggctttatctgaacttttaagacatccaagagtgatgaaaaaacttca |
243 |
Q |
| |
|
||||||||||||||| |||| | |||||||||||| | | | ||| || ||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
30001045 |
tgctcgacatgataggggcatcaattgatacatcttcaaacgtgatagagtgggctttatctgaacttttaaggcatccaagagtgatgaaaattcttca |
30001144 |
T |
|
| Q |
244 |
agat |
247 |
Q |
| |
|
|||| |
|
|
| T |
30001145 |
agat |
30001148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 247
Target Start/End: Original strand, 29953514 - 29953716
Alignment:
| Q |
45 |
aagattttgtagacatacttctttcaattatgcaccaaaccattgatgtcgagggtgaacagaatttcgtcattgatcgaactaacatcaaggctatttt |
144 |
Q |
| |
|
|||| ||||| |||||||||||| || |||||||||||||||||||| | || |||| | ||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
29953514 |
aagactttgttgacatacttcttacatttatgcaccaaaccattgatctagaaaatgaagaaaatcatttcattgatcgaactaacatcaaggcaatttt |
29953613 |
T |
|
| Q |
145 |
gctcgacatgatagtggcagctattgatacatctgctacctcgattgaatgggctttatctgaacttttaagacatccaagagtgatgaaaaaacttcaa |
244 |
Q |
| |
|
|| ||| ||| |||||||| |||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| || ||||||| |||||| |
|
|
| T |
29953614 |
actagacttgactgtggcagcaattgatacatctgctaccgtgattgaatgggctttatccgaacttctaagacatccaagggtaatgaaaatccttcaa |
29953713 |
T |
|
| Q |
245 |
gat |
247 |
Q |
| |
|
||| |
|
|
| T |
29953714 |
gat |
29953716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 45 - 247
Target Start/End: Original strand, 29944581 - 29944783
Alignment:
| Q |
45 |
aagattttgtagacatacttctttcaattatgcaccaaaccattgatgtcgagggtgaacagaatttcgtcattgatcgaactaacatcaaggctatttt |
144 |
Q |
| |
|
|||| ||||||||||||||||| | ||| |||||||| ||||||| | | ||||||| ||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
29944581 |
aagactttgtagacatacttctcacttttaagcaccaaaacattgatcatgggagtgaacaaaatcatgtcattgatcgaactaacatcaaagctatttt |
29944680 |
T |
|
| Q |
145 |
gctcgacatgatagtggcagctattgatacatctgctacctcgattgaatgggctttatctgaacttttaagacatccaagagtgatgaaaaaacttcaa |
244 |
Q |
| |
|
|| |||||| | |||||| | || ||||||||||||| | ||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
29944681 |
actagacatggttgtggcatcatttagtacatctgctaccacaattgagtgggctttatccgaacttttaaggcatccaagagtgatgaaaaatcttcaa |
29944780 |
T |
|
| Q |
245 |
gat |
247 |
Q |
| |
|
||| |
|
|
| T |
29944781 |
gat |
29944783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 247
Target Start/End: Original strand, 29964860 - 29964984
Alignment:
| Q |
123 |
gaactaacatcaaggctattttgctcgacatgatagtggcagctattgatacatctgctacctcgattgaatgggctttatctgaacttttaagacatcc |
222 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||| ||||||| ||||||||| | ||||| ||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
29964860 |
gaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttcagacatcc |
29964959 |
T |
|
| Q |
223 |
aagagtgatgaaaaaacttcaagat |
247 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
29964960 |
aagagtgatgaaaaagcttcaagat |
29964984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 30009938 - 30009814
Alignment:
| Q |
123 |
gaactaacatcaaggctattttgctcgacatgatagtggcagctattgatacatctgctacctcgattgaatgggctttatctgaacttttaagacatcc |
222 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||| ||||||| ||||||||| | ||||| ||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
30009938 |
gaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttcagacatcc |
30009839 |
T |
|
| Q |
223 |
aagagtgatgaaaaaacttcaagat |
247 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
30009838 |
aagagtgatgaaaaagcttcaagat |
30009814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 29946666 - 29946755
Alignment:
| Q |
159 |
tggcagctattgatacatctgctacctcgattgaatgggcttt-atctgaacttttaagacatccaagagtgatgaaaaaacttcaagat |
247 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
29946666 |
tggcagcaattgaaacatctgctaccgcgattgaatgggcttttatctgaacttttaaggaatccaagagtgatgaaaacccttcaagat |
29946755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University