View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16626_low_25 (Length: 237)

Name: NF16626_low_25
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16626_low_25
NF16626_low_25
[»] chr5 (1 HSPs)
chr5 (1-221)||(26155682-26155902)
[»] chr8 (3 HSPs)
chr8 (62-110)||(16032978-16033026)
chr8 (58-110)||(34482582-34482634)
chr8 (62-110)||(32840412-32840460)
[»] chr7 (2 HSPs)
chr7 (52-107)||(29814351-29814406)
chr7 (57-106)||(4902028-4902077)
[»] chr3 (2 HSPs)
chr3 (55-110)||(345158-345214)
chr3 (64-108)||(11283989-11284033)
[»] chr2 (1 HSPs)
chr2 (58-99)||(35325386-35325427)
[»] scaffold0006 (1 HSPs)
scaffold0006 (59-111)||(81498-81550)
[»] chr6 (1 HSPs)
chr6 (62-110)||(31432776-31432824)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26155902 - 26155682
Alignment:
Q  1 tttacccatggtgttttggggagtaaaatannnnnnnccaaatgaattacattgatattttaaaaaattgaatgaatatcatgatacatgatcatataac 100  Q
    |||||| ||| |||||||||||||||||||       | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26155902 tttaccaatgctgttttggggagtaaaatatttttttcaaaatgaattacattgatattttaaaaaattgaatgaatatcatgatacatgatcatataac 26155803  T
Q  101 aattcaatcatgttattggagtaaataattgttgttttcaatcgttcttaaattaccatttttactcgtataatattcacgtcattggagtttttataaa 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26155802 aattcaatcatgttattggagtaaataattgttcttttcaatcgttcttaaattgccatttttactcgtataatattcacgtcattggagtttttataaa 26155703  T
Q  201 tatcatgtctcttcaatattt 221  Q
    |||||||||||||||||||||    
T  26155702 tatcatgtctcttcaatattt 26155682  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 16032978 - 16033026
Alignment:
Q  62 aaaaaattgaatgaatatcatgatacatgatcatataacaattcaatca 110  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||||||    
T  16032978 aaaaaattgaaagaatatcatgatatatggtcatataacaattcaatca 16033026  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 34482582 - 34482634
Alignment:
Q  58 ttttaaaaaattgaatgaatatcatgatacatgatcatataacaattcaatca 110  Q
    ||||||||||||||| ||||| ||||||| ||||||| ||| |||||||||||    
T  34482582 ttttaaaaaattgaaagaataccatgatatatgatcaaatagcaattcaatca 34482634  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 32840460 - 32840412
Alignment:
Q  62 aaaaaattgaatgaatatcatgatacatgatcatataacaattcaatca 110  Q
    |||||||||||  |||| ||||||| |||| ||||||||||||||||||    
T  32840460 aaaaaattgaaaaaataccatgatatatgaccatataacaattcaatca 32840412  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 29814351 - 29814406
Alignment:
Q  52 ttgatattttaaaaaattgaatgaatatcatgatacatgatcatataacaattcaa 107  Q
    |||| |||||||||||||||| ||||| ||||||| |||||||||||||| |||||    
T  29814351 ttgagattttaaaaaattgaacgaataacatgatagatgatcatataacatttcaa 29814406  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 4902077 - 4902028
Alignment:
Q  57 attttaaaaaattgaatgaatatcatgatacatgatcatataacaattca 106  Q
    ||||| ||||||||||||||||  |||||| || ||||||||||||||||    
T  4902077 atttttaaaaattgaatgaatacaatgatatataatcatataacaattca 4902028  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 345158 - 345214
Alignment:
Q  55 atattttaaaa-aattgaatgaatatcatgatacatgatcatataacaattcaatca 110  Q
    ||||||||||| |||||||  |||||||||||| |||||||||||||| ||||||||    
T  345158 atattttaaaataattgaaacaatatcatgatatatgatcatataacatttcaatca 345214  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 11284033 - 11283989
Alignment:
Q  64 aaaattgaatgaatatcatgatacatgatcatataacaattcaat 108  Q
    ||||| ||| ||||||||||||| |||||||||||| ||||||||    
T  11284033 aaaatcgaaagaatatcatgatatatgatcatataaaaattcaat 11283989  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 35325427 - 35325386
Alignment:
Q  58 ttttaaaaaattgaatgaatatcatgatacatgatcatataa 99  Q
    |||||||||||||||| |||| ||||||| ||||||||||||    
T  35325427 ttttaaaaaattgaattaataacatgataaatgatcatataa 35325386  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 81498 - 81550
Alignment:
Q  59 tttaaaaaattgaatgaatatcatgatacatgatcatataacaattcaatcat 111  Q
    ||||||||||||||  |||| ||||||| |||||||||||| | |||||||||    
T  81498 tttaaaaaattgaaataataacatgataaatgatcatataatacttcaatcat 81550  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 31432824 - 31432776
Alignment:
Q  62 aaaaaattgaatgaatatcatgatacatgatcatataacaattcaatca 110  Q
    ||||||||||| ||||| ||||||| ||  |||||||||||||||||||    
T  31432824 aaaaaattgaaagaataccatgatatattgtcatataacaattcaatca 31432776  T

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