View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16626_low_28 (Length: 229)
Name: NF16626_low_28
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16626_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 32429514 - 32429711
Alignment:
| Q |
17 |
agtaatgaatagtgattgttatattttaatggtggagattgaaaatggnnnnnnntttgaaannnnnnncaatggagaggatccaaatcctcttaagcat |
116 |
Q |
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| T |
32429514 |
agtaatgaatagtggttgttatattttaatggtggagattgaaaatggagaaaactt-gagaaaattttcaatggagaggatccaaataatattaagcat |
32429612 |
T |
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| Q |
117 |
gcacttcaatttttgagtagttcttagttgctagattagattgtgtaacatgtttgaacaacatttcacattatttttatttgcattaaaacttctgtg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32429613 |
gcacttcaatttttgagtagttcttagttgctagatcagattgtgtaacatgtttgtacaacatttcacattatttttatttgcattaaaacttctgtg |
32429711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 2158496 - 2158461
Alignment:
| Q |
29 |
tgattgttatattttaatggtggagattgaaaatgg |
64 |
Q |
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| T |
2158496 |
tgattgttgtattttaatggtggagattgaaaatgg |
2158461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 37526465 - 37526428
Alignment:
| Q |
27 |
agtgattgttatattttaatggtggagattgaaaatgg |
64 |
Q |
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| T |
37526465 |
agtggttgttgtattttaatggtggagattgaaaatgg |
37526428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 40032329 - 40032284
Alignment:
| Q |
19 |
taatgaatagtgattgttatattttaatggtggagattgaaaatgg |
64 |
Q |
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||||||| |||| ||||| ||||||||||||| ||||||||||||| |
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| T |
40032329 |
taatgaaaagtggttgttgtattttaatggtgtagattgaaaatgg |
40032284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 23930401 - 23930433
Alignment:
| Q |
32 |
ttgttatattttaatggtggagattgaaaatgg |
64 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
23930401 |
ttgttgtattttaatggtggagattgaaaatgg |
23930433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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