View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16626_low_29 (Length: 223)

Name: NF16626_low_29
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16626_low_29
NF16626_low_29
[»] scaffold1643 (1 HSPs)
scaffold1643 (1-223)||(734-953)
[»] chr3 (19 HSPs)
chr3 (1-223)||(6795864-6796083)
chr3 (1-223)||(8470121-8470340)
chr3 (64-223)||(6945832-6945988)
chr3 (1-137)||(6481235-6481371)
chr3 (2-144)||(5262423-5262565)
chr3 (81-223)||(8453196-8453335)
chr3 (37-144)||(5279299-5279406)
chr3 (61-223)||(8570264-8570423)
chr3 (43-222)||(6555742-6555918)
chr3 (178-223)||(6840319-6840364)
chr3 (1-200)||(6528134-6528330)
chr3 (63-222)||(6734512-6734668)
chr3 (46-138)||(6140932-6141024)
chr3 (46-138)||(6257848-6257940)
chr3 (46-138)||(6236371-6236463)
chr3 (46-102)||(6264364-6264420)
chr3 (1-223)||(6450047-6450266)
chr3 (1-146)||(6521391-6521533)
chr3 (46-138)||(13271844-13271936)
[»] scaffold0425 (1 HSPs)
scaffold0425 (1-222)||(8748-8966)
[»] chr7 (1 HSPs)
chr7 (61-137)||(6574635-6574711)


Alignment Details
Target: scaffold1643 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 953 - 734
Alignment:
1 catttacccaacttggtatctcttcaactgttaagctgtggattatgttcccatttgtcaccacttgggcagcttccttctctcaaggagctttctattt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| | ||||||||||    
953 catttacccaacttagtatctcttcaactgttaagctgtggattatgttcccattttccaccacttgggcagcttccttctctcaagaatctttctattt 854  T
101 caaaatgtgacggaataaagatcattggtgaagagtttcatggcaacaacaatttaacaaatgttccgttcttgtcccttgaagttttgaaatttgagaa 200  Q
    || | ||||| |||||||||||||||||||||||| |||||||   || |||||||||  ||||||||||||||||||||||||||||||||||||||||    
853 catattgtgatggaataaagatcattggtgaagagattcatgg---cagcaatttaacgcatgttccgttcttgtcccttgaagttttgaaatttgagaa 757  T
201 gatgaacaattgggaggaatggt 223  Q
    | |||||||||||||||||||||    
756 gttgaacaattgggaggaatggt 734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6795864 - 6796083
Alignment:
1 catttacccaacttggtatctcttcaactgttaagctgtggattatgttcccatttgtcaccacttgggcagcttccttctctcaaggagctttctattt 100  Q
    |||||| ||||||| |||||||||||||||  |  || ||||||||||||| ||||| || |||| |||||||| || ||||||||||| ||||| ||||    
6795864 catttatccaacttagtatctcttcaactgcaagactatggattatgttccgatttgccagcactagggcagctcccctctctcaaggacctttccattt 6795963  T
101 caaaatgtgacggaataaagatcattggtgaagagtttcatggcaacaacaatttaacaaatgttccgttcttgtcccttgaagttttgaaatttgagaa 200  Q
    ||| |||||||||||||| ||||||||||||||| ||| |   |||||| | || |||||||||| |||||  ||||||||| ||||||||||||||| |    
6795964 caagatgtgacggaataatgatcattggtgaagaatttta---caacaatagttcaacaaatgtttcgttcaggtcccttgaggttttgaaatttgagga 6796060  T
201 gatgaacaattgggaggaatggt 223  Q
    |||| ||||||||||||||||||    
6796061 gatggacaattgggaggaatggt 6796083  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8470340 - 8470121
Alignment:
1 catttacccaacttggtatctcttcaactgttaagctgtggattatgttcccatttgtcaccacttgggcagcttccttctctcaaggagctttctattt 100  Q
    |||||||| ||||| ||||||||| || |    |||||||||| ||||  ||||||| |||||||||| ||||| || | ||||||||||||| |||| |    
8470340 catttaccaaacttagtatctcttaaattacagagctgtggatcatgtctccatttgccaccacttggacagctcccgtgtctcaaggagcttgctatct 8470241  T
101 caaaatgtgacggaataaagatcattggtgaagagtttcatggcaacaacaatttaacaaatgttccgttcttgtcccttgaagttttgaaatttgagaa 200  Q
       | ||| | ||||||||||| ||||||||||||||||||||||||||   || ||||||||||||||||||||||||||||||||||||||||| |||    
8470240 gtgactgtcatggaataaagataattggtgaagagtttcatggcaacaa---ttcaacaaatgttccgttcttgtcccttgaagttttgaaatttgtgaa 8470144  T
201 gatgaacaattgggaggaatggt 223  Q
    |||||||| ||||||||||||||    
8470143 gatgaacagttgggaggaatggt 8470121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 6945988 - 6945832
Alignment:
64 cttgggcagcttccttctctcaaggagctttctatttcaaaatgtgacggaataaagatcattggtgaagagtttcatggcaacaacaatttaacaaatg 163  Q
    ||||||||| | || |||||||||||| ||||||||||||| ||| |||||||||||||||| || ||||||||| |   |||||| | |  ||||||||    
6945988 cttgggcagttcccctctctcaaggagatttctatttcaaactgtaacggaataaagatcatcggcgaagagtttta---caacaatagtacaacaaatg 6945892  T
164 ttccgttcttgtcccttgaagttttgaaatttgagaagatgaacaattgggaggaatggt 223  Q
    ||||||||  ||||||||||||||||||||| ||| | |||  |||||||||||||||||    
6945891 ttccgttcaggtcccttgaagttttgaaattggagcatatggtcaattgggaggaatggt 6945832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 6481235 - 6481371
Alignment:
1 catttacccaacttggtatctcttcaactgttaagctgtggattatgttcccatttgtcaccacttgggcagcttccttctctcaaggagctttctattt 100  Q
    |||||||||||||| |||||||||||| ||     ||||||||||||||| |||||| ||||||||||||| || || ||||||| ||||||||||||||    
6481235 catttacccaacttagtatctcttcaaatgcgtcactgtggattatgttctcatttgccaccacttgggcaactcccctctctcagggagctttctattt 6481334  T
101 caaaatgtgacggaataaagatcattggtgaagagtt 137  Q
    |||| ||| |  ||||||||||||| |||||||||||    
6481335 caaactgtaaaagaataaagatcatcggtgaagagtt 6481371  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 5262565 - 5262423
Alignment:
2 atttacccaacttggtatctcttcaactgttaagctgtggattatgttcccatttgtcaccacttgggcagcttccttctctcaaggagctttctatttc 101  Q
    |||||| |||||||||||| ||| |||||   || |||||||| |||||||  ||| ||||||||||| ||||||| ||||| || ||||||||||||||    
5262565 atttactcaacttggtatcccttgaactgaatagatgtggattttgttcccggttgccaccacttgggaagcttccctctcttaaagagctttctatttc 5262466  T
102 aaaatgtgacggaataaagatcattggtgaagagtttcatggc 144  Q
    | ||||| | |||||| ||||||| |||||||||||| |||||    
5262465 agaatgttatggaatagagatcatcggtgaagagttttatggc 5262423  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 8453335 - 8453196
Alignment:
81 tctcaaggagctttctatttcaaaatgtgacggaataaagatcattggtgaagagtttcatggcaacaacaatttaacaaatgttccgttcttgtccctt 180  Q
    |||||||  ||||||||||||| | ||||| |||||||||||||| |||||||||||| | |   |||  | || || |||||| | ||||  ||| |||    
8453335 tctcaagatgctttctatttcagactgtgatggaataaagatcataggtgaagagttttacg---acagtagttcaataaatgtgctgttcaggtctctt 8453239  T
181 gaagttttgaaatttgagaagatgaacaattgggaggaatggt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||    
8453238 gaagttttgaaatttgagaagatgaacaattgggaggaatggt 8453196  T

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Target: chr3; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 5279406 - 5279299
Alignment:
37 tgtggattatgttcccatttgtcaccacttgggcagcttccttctctcaaggagctttctatttcaaaatgtgacggaataaagatcattggtgaagagt 136  Q
    |||||||| |||| ||| ||  ||||||||||||||||||| ||||| |||||||||||||||||| ||||||| |||||| |||| || ||||||||||    
5279406 tgtggattttgtttccagtttccaccacttgggcagcttccctctcttaaggagctttctatttcagaatgtgatggaatagagattatcggtgaagagt 5279307  T
137 ttcatggc 144  Q
    || |||||    
5279306 tttatggc 5279299  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 223
Target Start/End: Original strand, 8570264 - 8570423
Alignment:
61 ccacttgggcagcttccttctctcaaggagctttctatttcaaaatgtgacggaataaagatcattggtgaagagtttcatggcaacaacaatttaacaa 160  Q
    |||||||||||||| || | |||||||||||||||||||||| | ||| | || ||| | ||||||||  |||||||| | ||||| |    || |||||    
8570264 ccacttgggcagctcccctatctcaaggagctttctatttcatattgttatggtatagaaatcattggcaaagagttttacggcaatag---ttcaacaa 8570360  T
161 atgttccgttcttgtcccttgaagttttgaaatttgagaagatgaacaattgggaggaatggt 223  Q
     | ||||||||  |||||||||||||||| ||||||    |||||||||||||||||||||||    
8570361 ttattccgttcaggtcccttgaagttttggaatttgcatggatgaacaattgggaggaatggt 8570423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 6555742 - 6555918
Alignment:
43 ttatgttcccatttgtcaccacttgggcagcttccttctctcaaggagctttctatttcaaaatgtgacggaataaagatcattggtgaagagtttcatg 142  Q
    |||||||||  |||| || ||||||| || || |||||||||||| | ||||| ||||   | ||||| |||||||||||||||| |||||||||| |||    
6555742 ttatgttcctgtttgccaacacttggacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaagagttttatg 6555841  T
143 gcaacaacaatttaacaaatgttccgttcttgtcccttgaagttttgaaatttgagaagatgaacaattgggaggaatgg 222  Q
    |   ||| |||| ||||| |||||| |||  ||||||||||  ||||| ||||||| | |||  ||| ||||||||||||    
6555842 g---caataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatgg 6555918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 6840319 - 6840364
Alignment:
178 cttgaagttttgaaatttgagaagatgaacaattgggaggaatggt 223  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
6840319 cttgaagttttgaaatttgagaagatgaacaattgggagaaatggt 6840364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 6528134 - 6528330
Alignment:
1 catttacccaacttggtatctcttcaactgttaagctgtggattatgttcccatttgtcaccacttgggcagcttccttctctcaaggagctttctattt 100  Q
    |||||||||||||| |||||||||||||||    | ||||| |||||||||  |||| |||| ||||| || || |||||||| ||| | |||||  |||    
6528134 catttacccaacttagtatctcttcaactgaatggttgtgggttatgttcctgtttgccaccccttggacaactcccttctcttaagaaactttccgttt 6528233  T
101 caaaatgtgacggaataaagatcattggtgaagagtttcatggcaacaacaatttaacaaatgttccgttcttgtcccttgaagttttgaaatttgagaa 200  Q
       | ||||| |||||||||||||||| |||||| ||| |||   |||| |||| ||||| |||||| |||  ||||||| || ||| || |||||||||    
6528234 atgattgtgaaggaataaagatcattgatgaagatttttatg---acaataattcaacaattgttccattcaagtcccttcaattttcgatatttgagaa 6528330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 222
Target Start/End: Complemental strand, 6734668 - 6734512
Alignment:
63 acttgggcagcttccttctctcaaggagctttctatttcaaaatgtgacggaataaagatcattggtgaagagtttcatggcaacaacaatttaacaaat 162  Q
    |||||| || || |||||||||||| | ||||| ||||   | ||||| |||||||||||||||| |||||||||| ||||   ||| |||| ||||| |    
6734668 acttggacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaagagttttatgg---caataattcaacaatt 6734572  T
163 gttccgttcttgtcccttgaagttttgaaatttgagaagatgaacaattgggaggaatgg 222  Q
    ||||| |||  ||||||||||  ||||| ||||||| | |||  ||| ||||||||||||    
6734571 gttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatgg 6734512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 6141024 - 6140932
Alignment:
46 tgttcccatttgtcaccacttgggcagcttccttctctcaaggagctttctatttcaaaatgtgacggaataaagatcattggtgaagagttt 138  Q
    |||||||| ||| |||||||||||||| | |||||||||||| ||||||| ||||||   ||| | |||||| |||||||||||  |||||||    
6141024 tgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttt 6140932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 6257940 - 6257848
Alignment:
46 tgttcccatttgtcaccacttgggcagcttccttctctcaaggagctttctatttcaaaatgtgacggaataaagatcattggtgaagagttt 138  Q
    |||||||| ||| ||||||||||| || | |||||||||||| ||||||| ||||||   ||| | ||||||||||||||||||  |||||||    
6257940 tgttcccagttgccaccacttgggaagttcccttctctcaagaagctttccatttcaggctgtcatggaataaagatcattggttcagagttt 6257848  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 6236463 - 6236371
Alignment:
46 tgttcccatttgtcaccacttgggcagcttccttctctcaaggagctttctatttcaaaatgtgacggaataaagatcattggtgaagagttt 138  Q
    |||||||| ||| |||||||||||||| | |||||||||||| ||||||| || |||  |||| | ||||||| | ||||||||  |||||||    
6236463 tgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatatcaggatgtcatggaataacgttcattggttcagagttt 6236371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 6264420 - 6264364
Alignment:
46 tgttcccatttgtcaccacttgggcagcttccttctctcaaggagctttctatttca 102  Q
    |||||||| ||| |||||||||||||| | |||||||||||| ||||||| ||||||    
6264420 tgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttca 6264364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6450047 - 6450266
Alignment:
1 catttacccaacttggtatctcttcaactgttaagctgtggattatgttcccatttgtcaccacttgggcagcttccttctctcaaggagctttctattt 100  Q
    |||||||||||||| ||||||||| |||||   ||||||| | | |||||||  ||| | |||||||||||||| || | ||| || |||||   |||||    
6450047 catttacccaacttagtatctcttgaactgcggagctgtgaaatttgttccctgttgccgccacttgggcagctcccatttcttaaagagctccgtattt 6450146  T
101 caaaatgtgacggaataaagatcattggtgaagagtttcatggcaacaacaatttaacaaatgttccgttcttgtcccttgaagttttgaaatttgagaa 200  Q
    || | ||| | |||||||||||||| ||  |||||||  ||||    || |||| || || |||||| |||   || |||||||| |||||||||||| |    
6450147 cagattgtaatggaataaagatcatcggcaaagagttctatgg---aaataattcaataattgttccattcagatctcttgaagtattgaaatttgagca 6450243  T
201 gatgaacaattgggaggaatggt 223  Q
    | || | ||||||||||||||||    
6450244 gttggagaattgggaggaatggt 6450266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 6521391 - 6521533
Alignment:
1 catttacccaacttggtatctcttcaactgttaagctgtggattatgttcccatttgtcaccacttgggcagcttccttctctcaaggagctttctattt 100  Q
    |||||||||||||| |||||||||||||||  |||   || |  |||||||  |||| || ||||||| || || |||||||||||| | ||||| ||||    
6521391 catttacccaacttagtatctcttcaactg--aaggattgtag-atgttcctgtttgccaacacttggacaactcccttctctcaagaaactttccattt 6521487  T
101 caaaatgtgacggaataaagatcattggtgaagagtttcatggcaa 146  Q
       | ||||| |||||||||||||||| |||||| ||| |||||||    
6521488 atgactgtgaaggaataaagatcattgatgaagatttttatggcaa 6521533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 13271844 - 13271936
Alignment:
46 tgttcccatttgtcaccacttgggcagcttccttctctcaaggagctttctatttcaaaatgtgacggaataaagatcattggtgaagagttt 138  Q
    |||||||| ||| |||||||||||||| | ||||||||| || ||||||| |||||    ||| | |||||| |||||||||||  |||||||    
13271844 tgttcccagttgccaccacttgggcagttgccttctctcgagaagctttccatttctggctgtcatggaatagagatcattggttcagagttt 13271936  T

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Target: scaffold0425 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8748 - 8966
Alignment:
1 catttacccaacttggtatctcttcaactgttaagctgtggattatgttcccatttgtcaccacttgggcagcttccttctctcaaggagctttctattt 100  Q
    |||||||| ||||| |||||||||||||||    | ||||| |||||||||  |||| || ||||||| || || |||||||||||| | ||||| ||||    
8748 catttaccgaacttagtatctcttcaactgaagggttgtgggttatgttcctgtttgccagcacttggacaactcccttctctcaagaaactttccattt 8847  T
101 caaaatgtgacggaataaagatcattggtgaagagtttcatggcaacaacaatttaacaaatgttccgttcttgtcccttgaagttttgaaatttgagaa 200  Q
       | ||||| |||||||||||||||| |||||| ||| ||||   ||| |||| ||||| |||||| |||  ||||||||||  ||||| ||||| | |    
8848 atgactgtgaaggaataaagatcattgatgaagaattttatgg---caataattcaacaattgttccattcaagtcccttgaatatttgagatttgtgga 8944  T
201 gatgaacaattgggaggaatgg 222  Q
     |||  ||| ||||||||||||    
8945 tatggtcaactgggaggaatgg 8966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 6574635 - 6574711
Alignment:
61 ccacttgggcagcttccttctctcaaggagctttctatttcaaaatgtgacggaataaagatcattggtgaagagtt 137  Q
    |||||||| ||||| || | ||||||||||||||  ||||||   ||| | |||||||||||||| |||||||||||    
6574635 ccacttggacagctcccatgtctcaaggagcttttcatttcaggttgtaatggaataaagatcatcggtgaagagtt 6574711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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