View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16626_low_3 (Length: 499)

Name: NF16626_low_3
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16626_low_3
NF16626_low_3
[»] chr8 (8 HSPs)
chr8 (1-469)||(25617236-25617695)
chr8 (1-481)||(25391358-25391836)
chr8 (1-418)||(25358327-25358742)
chr8 (1-432)||(25677982-25678386)
chr8 (241-481)||(25494703-25494929)
chr8 (57-181)||(9229278-9229403)
chr8 (1-43)||(25494660-25494702)
chr8 (53-136)||(44300477-44300558)
[»] scaffold0466 (1 HSPs)
scaffold0466 (4-481)||(7984-8466)
[»] scaffold1041 (1 HSPs)
scaffold1041 (231-481)||(908-1169)
[»] chr6 (4 HSPs)
chr6 (56-250)||(1094381-1094573)
chr6 (41-181)||(34249307-34249448)
chr6 (53-121)||(1090747-1090817)
chr6 (84-179)||(20728209-20728303)
[»] chr5 (3 HSPs)
chr5 (52-181)||(16098386-16098519)
chr5 (52-181)||(32743607-32743737)
chr5 (52-269)||(39777363-39777577)
[»] chr1 (2 HSPs)
chr1 (56-181)||(29360204-29360330)
chr1 (41-269)||(5716838-5717063)
[»] scaffold0009 (1 HSPs)
scaffold0009 (52-181)||(3228-3358)
[»] chr3 (2 HSPs)
chr3 (86-181)||(25080007-25080103)
chr3 (105-145)||(27049173-27049213)
[»] chr4 (1 HSPs)
chr4 (52-179)||(18982262-18982388)
[»] chr2 (1 HSPs)
chr2 (84-158)||(40709193-40709267)
[»] scaffold0360 (1 HSPs)
scaffold0360 (8-72)||(15155-15218)


Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 25617236 - 25617695
Alignment:
Q  1 ataagttgtcaaaaatcaagttcattattttatattttattctcaattatgttgggcattgtttgtgaagctccaacgtgttagcctcgagtgcacgagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  25617236 ataagttgtcaaaaatcaagttcattattttatattttattctcaattatgttgggcattgtttgtgaagctccaacgtgttagcctcgagtgcacga-- 25617333  T
Q  101 tcagacacgtagttgtgtaaactttagagagcaaaatcagatattggattgcaccggaggtccaccggaaatttgctttcatgtgagttgctttttgtca 200  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25617334 -------cgtagttgtgtaaactttagagagcaaaatcagatattggattgcaccggaggtccaccggaaatttgctttcatgtgagttgctttttgtca 25617426  T
Q  201 cggcacaacaactctaatattctatctttcctatctatccgaaatctatttcctattaatatttccaacggtaatatcttgtttccctctcactttttac 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25617427 cggcacaacaactctaatattctatctttcctatctatccgaaatctatttcctattaatatttccaacgctaatatcttgtttccctctcactttttac 25617526  T
Q  301 tttgtatccctatggtttcttattgtataggactgcattcaaaaaggcatacttctcgcccatatgaggagctctcaactcgtgtttttcatcttgtgag 400  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25617527 tttgtatccctatggtttcttaatgtataggactgcattcaaaaaggcatacttctcgcccatatgaggagctctcaactcgtgtttttcaacttgtgag 25617626  T
Q  401 agtactattcttacggtaaatttgatgagcgacttgcaaaaaatactatatttcaatcaatcttttcag 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25617627 agtactattcttacggtaaatttgatgagcgacttgcaaaaaatactatatttcaatcaatcttttcag 25617695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 25391358 - 25391836
Alignment:
Q  1 ataagttgtcaaaaatcaagttcattattttatattttattctcaattatgttgggcattgtttgtgaagctccaacgtgttagcctcgagtgcacgagt 100  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||| ||||||||||| ||| | |||||||||||||||||    
T  25391358 ataagttgtcaaaaatcaagttcattgttttatattctattctcgattattttgggcattgtttatgaagctccaaagtgctggcctcgagtgcacgagt 25391457  T
Q  101 tcagacacgtagttgtgtaaactttagagagcaaaatcagatattggattgcaccggaggtccaccggaaatttgctttcatgtgagttgctttttgtca 200  Q
    ||||| || ||||||||||||| || | |||||||| | |||||||||||||||||||||||||||| |||||||||||||| | |||  ||||||  ||    
T  25391458 tcagatacatagttgtgtaaaccttggggagcaaaaccggatattggattgcaccggaggtccaccgaaaatttgctttcattttagtgacttttt-cca 25391556  T
Q  201 cggcacaacaactctaatattctatctttcctatctatccgaaatctatttcctattaatatttccaacggtaatatcttgtttccctctcactttttac 300  Q
    ||||||||||          ||| ||||  |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||    
T  25391557 cggcacaaca----------tctctctt--ctatctttccgaaatctatttcctattaatatttccaacagtaatatattgtttccctctcgctttttac 25391644  T
Q  301 tttgtatccctatggtttctta------------ttgtataggactgcattcaaaaaggcatacttctcgcccatatgaggagctctcaactcgtgtttt 388  Q
    |||||||||| |||||||||||            || ||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25391645 tttgtatcccaatggtttcttaatgtatagttatttctataggaatccattcaaaaaggcatacttctcgtccatatgaggagctctcaactcgtgtttt 25391744  T
Q  389 tcatcttgtgagagtactattcttacggtaaatttgatgagcgacttgcaaaaaatactatatttcaatcaatcttttcagtgtagccttttg 481  Q
    ||| ||||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||||||||||||||||||  ||||||||||||||    
T  25391745 tcaacttgtgagagtactattcttacggt-attttgatgagagacttgcgaaaaatactatatttcaatcaatctttcaagtgtagccttttg 25391836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 25358327 - 25358742
Alignment:
Q  1 ataagttgtcaaaaatcaagttcattattttatattttattctcaattatgttgggcattgtttgtgaagctccaacgtgttagcctcgagtgcacgagt 100  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||| ||||||||||| ||| | | |||||||||||||||    
T  25358327 ataagttgtcaaaaatcaagttcattgttttatattctattctcgattattttgggcattgtttatgaagctccaaagtgctggtctcgagtgcacgagt 25358426  T
Q  101 tcagacacgtagttgtgtaaactttagagagcaaaatcagatattggattgcaccggaggtccaccggaaatttgctttcatgtgagttgctttttgtca 200  Q
    ||||| || ||||||||||||| || | |||||||| | |||||||||||||||||||||||||||| |||||||||||||| | |||  ||||||  ||    
T  25358427 tcagatacatagttgtgtaaaccttggggagcaaaaccggatattggattgcaccggaggtccaccgaaaatttgctttcatttcagtgacttttt-cca 25358525  T
Q  201 cggcacaacaactctaatattctatctttcctatctatccgaaatctatttcctattaatatttccaacggtaatatcttgtttccctctcactttttac 300  Q
    ||||||||||          ||| ||||  |||||| ||| |||||||||||||||||||||||||||| ||||||| |||||| |||||| ||||||||    
T  25358526 cggcacaaca----------tctctctt--ctatctttccaaaatctatttcctattaatatttccaacagtaatatattgtttacctctcgctttttac 25358613  T
Q  301 tttgtatccctatggtttctta-----------ttgtataggactgcattcaaaaaggcatacttctcgcccatatgaggagctctcaactcgtgttttt 389  Q
    |||||||||| |||||||||||           || ||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25358614 tttgtatcccaatggtttcttaatgtacagtctttctataggaatccattcaaaaaggcatacttctcgtccatatgaggagctctcaactcgtgttttt 25358713  T
Q  390 catcttgtgagagtactattcttacggta 418  Q
    || ||||||||||||||||||||||||||    
T  25358714 caacttgtgagagtactattcttacggta 25358742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 25677982 - 25678386
Alignment:
Q  1 ataagttgtcaaaaatcaagttcattattttatattttattctcaattatgttgggcattgtttgtgaagctccaacgtgttagcctcgagtgcacgagt 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| || | |||||||||||||||||    
T  25677982 ataagttgtcaaaaatcaagttcattattttatattctattctcaattattttgggcattgtttgtgaagctccaacatgctggcctcgagtgcacgagt 25678081  T
Q  101 tcagacacgtagttgtgtaaactttagagagcaaaatcagatattggattgcaccggaggtccaccggaaatttgctttcatgtgagttgctttttgtca 200  Q
    ||||| |||||||||||||||| || || ||||||| | |||||||||||||||||||||||||||| |||||||||||||| | ||| |||||||  ||    
T  25678082 tcagatacgtagttgtgtaaaccttggaaagcaaaaccggatattggattgcaccggaggtccaccgaaaatttgctttcatttcagtggcttttt-cca 25678180  T
Q  201 cggcacaacaactctaatattctatctttcctatctatccgaaatctatttcctattaatatttccaacggtaatatcttgtttccctctcactttttac 300  Q
    || |||||||          ||| ||||  |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  25678181 cgacacaaca----------tctctctt--ctatctttccgaaatctatttcctattaatatttccaacagtaatatcttgtttccctctcgctttttac 25678268  T
Q  301 tttgtatccctatggtttcttattgtataggactgcattcaaaaaggcatacttctcgcccatatgaggagctctcaactcgtgtttttcatcttgtgag 400  Q
    |||||||||| ||||||||||| |||||   | | | |||  | ||| ||         |||||||||||||||||||||| ||||||||| |||||||     
T  25678269 tttgtatcccaatggtttcttaatgtat---aattctttc-tataggaat---------ccatatgaggagctctcaactcatgtttttcaacttgtgaa 25678355  T
Q  401 agtactattcttacggtaaatttgatgagcga 432  Q
    ||||||||||||||||| ||||||||||||||    
T  25678356 agtactattcttacggt-aatttgatgagcga 25678386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 241 - 481
Target Start/End: Original strand, 25494703 - 25494929
Alignment:
Q  241 gaaatctatttcctattaatatttccaacggtaatatcttgtttccctctcactttttactttgtatccctatggtttcttattgtataggactgcattc 340  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||| ||||||   ||   |||    
T  25494703 gaaatctatttcctattaatatttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtataattct---ttc 25494799  T
Q  341 aaaaaggcatacttctcgcccatatgaggagctctcaactcgtgtttttcatcttgtgagagtactattcttacggtaaatttgatgagcgacttgcaaa 440  Q
     | | || ||         |||||||||||||||||||||| |||||||||  |||||||| ||||||||||| ||||| ||||||||||||||||| ||    
T  25494800 tata-ggaat---------ccatatgaggagctctcaactcatgtttttcaatttgtgagattactattcttatggtaa-tttgatgagcgacttgcgaa 25494888  T
Q  441 aaatactatatttcaatcaatcttttcagtgtagccttttg 481  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  25494889 aaatactaaatttcaatcaatcttttcagtgtagccttttg 25494929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 181
Target Start/End: Complemental strand, 9229403 - 9229278
Alignment:
Q  57 cattgtttgtgaagctccaacgtgttagcc-tcgagtgcacgagttcagacacgtagttgtgtaaactttagagagcaaaatcagatattggattgcacc 155  Q
    |||||||||||||||||||  ||||| ||| |  |||||||||||||||||| | | |||||||||| || |||||||||| | |||||||| ||||| |    
T  9229403 cattgtttgtgaagctccattgtgtttgcccttaagtgcacgagttcagacatgcaattgtgtaaaccttggagagcaaaaccggatattgggttgcatc 9229304  T
Q  156 ggaggtccaccggaaatttgctttca 181  Q
     |||||| | || |||||| ||||||    
T  9229303 tgaggtctatcgaaaattttctttca 9229278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25494660 - 25494702
Alignment:
Q  1 ataagttgtcaaaaatcaagttcattattttatattttattct 43  Q
    ||||||||||||||||||||||||| |||||||||| ||||||    
T  25494660 ataagttgtcaaaaatcaagttcatcattttatattctattct 25494702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 44300477 - 44300558
Alignment:
Q  53 tgggcattgtttgtgaagctccaacgtgttagcctcgagtgcacgagttcagacacgtagttgtgtaaactttagagagcaaaa 136  Q
    ||||||| |||||||| ||||||||||||| || ||||||  ||||||||||  || ||||||||||||| || | ||||||||    
T  44300477 tgggcatcgtttgtgaggctccaacgtgttggcttcgagtatacgagttcag--acctagttgtgtaaaccttggggagcaaaa 44300558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 4 - 481
Target Start/End: Complemental strand, 8466 - 7984
Alignment:
Q  4 agttgtcaaaaatcaagttcattattttatattttattctcaattatgttgggcattgtttgtgaagctccaacgtgttagcctcgagtgcacgagttca 103  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  8466 agttgtcaaaaatcaagttcattattttatattctattctcaattattttgggtattgtttgtgaagctccaacgtgctagcctcaagtgcacgagttca 8367  T
Q  104 gacacgtagttgtgtaaactttagagagcaaaatcagatattggattgcaccggaggtccaccggaaatttgctttcatgtgagttgctttttgtcacgg 203  Q
    ||||||||||||||||||| || | |||||||| | ||||||  |||||||| ||||||||  |||||||||||||||||  |||||| ||||| |||||    
T  8366 gacacgtagttgtgtaaacattggggagcaaaaccggatattaaattgcaccagaggtccattggaaatttgctttcatggcagttgc-ttttgccacgg 8268  T
Q  204 cacaacaactctaatattctatctttcctatctatccgaaatctatttcctattaatatttccaacggtaatatcttgtttccctctcactttttacttt 303  Q
    | |||||||||   | ||||||||||| ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  8267 cgcaacaactc---tcttctatctttcgtatctatccgaa--ctatttcctattaatatttccaacagtaatatcttgtttccctctcacttttcacttt 8173  T
Q  304 gtatccctatggtttctta------------ttgtataggactgcattcaaaaaggcatacttctcgcccatatgaggagctctcaactcgtgtttttca 391  Q
    ||||||| ||||||||| |            || ||||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||||||||    
T  8172 gtatcccaatggtttctaaatgtatagttctttctataggactccattcaaaaaggcatagttcttgtccatatgaggagctctcaactcgtgtttttca 8073  T
Q  392 tcttgtgagagtactattcttacggtaaatttgatgagcgacttgcaaaaaatactatatttcaatcaatcttttcagtgtagccttttg 481  Q
     ||||||||||||||||||||| ||| | ||||||||| ||||||| ||||||||||||||||||||||| |||||||  ||||||||||    
T  8072 acttgtgagagtactattcttatggt-attttgatgagtgacttgcgaaaaatactatatttcaatcaatattttcagcttagccttttg 7984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 231 - 481
Target Start/End: Complemental strand, 1169 - 908
Alignment:
Q  231 ctatctatccgaaatctatttcctattaatatttccaacggtaatatcttgtttccctctcactttttactttgtatccctatggtttcttattgtatag 330  Q
    |||||| |||||||||||||||||| |||||||| |||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| | |||||||    
T  1169 ctatctttccgaaatctatttcctaataatattttcaacagtaatatcttgtttccctctcgctttttactttgtatcccaatggtttctaaatgtatag 1070  T
Q  331 ------------gactgcattcaaaaaggcatacttctcgcccatatgaggagctctcaactcgtgtttttcatcttgtgagagtactattcttacggta 418  Q
                |||| |||||||||||||| |||||| | |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||     
T  1069 ttctttctataggactccattcaaaaaggcacacttcttgtccatatgaggagctctcaactcgtgtttttcaactcgtgagagtactattcttacggt- 971  T
Q  419 aatttgatgagcgacttgcaaaaaatactatatttcaatcaatcttttcagtgtagccttttg 481  Q
    | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  970 attttgatgagcgacttgcgaaaaatactatatttcaatcaatcttttcagtgtagccttttg 908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 56 - 250
Target Start/End: Complemental strand, 1094573 - 1094381
Alignment:
Q  56 gcattgtttgtgaagctccaacgtgtta--gcctcgagtgcacgagttcagacacgtagttgtgtaaactttagagagcaaaatcagatattggattgca 153  Q
    |||||||||||||||||||| ||||||   |||||||||||||||||||| ||||| |||||||||||| |||| |||||||| | ||| |||| |||||    
T  1094573 gcattgtttgtgaagctccatcgtgttcaggcctcgagtgcacgagttcacacacgcagttgtgtaaaccttagggagcaaaaccggat-ttgggttgca 1094475  T
Q  154 -ccggaggtccaccggaaatttgctttcatgtgagttgctttttgtcacggcacaacaactctaatattctatctttcctatctatccgaaatctatt 250  Q
     |||||| ||||||| ||||||||||||| |  || ||  ||||||||||||||||||||||   | ||||||||||||||||||| | |||||||||    
T  1094474 cccggagatccaccgaaaatttgctttcaggacag-tgacttttgtcacggcacaacaactc---tcttctatctttcctatctattcaaaatctatt 1094381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 41 - 181
Target Start/End: Original strand, 34249307 - 34249448
Alignment:
Q  41 tctcaattatgttgggcattgtttgtgaagctccaacgtgttag-cctcgagtgcacgagttcagacacgtagttgtgtaaactttagagagcaaaatca 139  Q
    |||| ||||| ||||||||||||| |||||||||| |||||| |  |||||||||||||||||||||| | |||| ||||||  || | ||||||||       
T  34249307 tctctattattttgggcattgtttatgaagctccatcgtgtttgatctcgagtgcacgagttcagacatgcagttatgtaaatcttggggagcaaaactg 34249406  T
Q  140 gatattggattgcaccggaggtccaccggaaatttgctttca 181  Q
    |||| ||  |||||| |||||||||||| |||||| ||||||    
T  34249407 gataatgagttgcactggaggtccaccgaaaattttctttca 34249448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 1090817 - 1090747
Alignment:
Q  53 tgggcattgtttgtgaagctccaacgtgtta--gcctcgagtgcacgagttcagacacgtagttgtgtaaa 121  Q
    ||||||||||||||||| ||||  ||||||   ||||||||||  ||||||||||||||||||||||||||    
T  1090817 tgggcattgtttgtgaaactccgtcgtgttcaggcctcgagtgtccgagttcagacacgtagttgtgtaaa 1090747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 84 - 179
Target Start/End: Complemental strand, 20728303 - 20728209
Alignment:
Q  84 gcctcgagtgcacgagttcagacacgtagttgtgtaaactttagagagcaaaatcagatattggattgcaccggaggtccaccggaaatttgcttt 179  Q
    ||||||||||||| | |||| ||||||||||||||||| ||| ||||||||||    || || | || ||||||| ||||||||||||||||||||    
T  20728303 gcctcgagtgcacaa-ttcaaacacgtagttgtgtaaattttggagagcaaaactgaattttaggttacaccggaagtccaccggaaatttgcttt 20728209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 16098519 - 16098386
Alignment:
Q  52 ttgggcattgtttgtgaagct----ccaacgtgttagcctcgagtgcacgagttcagacacgtagttgtgtaaactttagagagcaaaatcagatattgg 147  Q
    |||||||||||||||||||||    |||||||||| |||||||||| ||||||||| |||||||||||||||||||||  ||||||||| | | |||||     
T  16098519 ttgggcattgtttgtgaagctagctccaacgtgttggcctcgagtgaacgagttcacacacgtagttgtgtaaactttgaagagcaaaaccggttattga 16098420  T
Q  148 attgcaccggaggtccaccggaaatttgctttca 181  Q
    ||||||| |||| |||||||||| ||||||||||    
T  16098419 attgcactggagatccaccggaattttgctttca 16098386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 32743737 - 32743607
Alignment:
Q  52 ttgggcattgtttgtgaagctccaacgtgttag-cctcgagtgcacgagttcagacacgtagttgtgtaaactttagagagcaaaatcag-atattggat 149  Q
    ||||| |||||||||||||||||| |||||| | |||| |||||| ||||||||||| | |||||||||||| || | ||||||| |||| | ||| |||    
T  32743737 ttgggtattgtttgtgaagctccatcgtgtttggcctcaagtgcatgagttcagacaagcagttgtgtaaaccttggggagcaaa-tcaggaaattagat 32743639  T
Q  150 tgcaccggaggtccaccggaaatttgctttca 181  Q
    |||| |||||||||||||||||||||||||||    
T  32743638 tgcatcggaggtccaccggaaatttgctttca 32743607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 269
Target Start/End: Original strand, 39777363 - 39777577
Alignment:
Q  52 ttgggcattgtttgtgaagctccaacgtgtt-ag-cctcgagtgcacgagttcagacacgtagttgtgtaaactttagagagcaaaatcagatattggat 149  Q
    ||||||||||||  |||||||||| |||||| || |||||||||||   ||||| ||||| ||||||||||||||| | |||||||| | |||  ||| |    
T  39777363 ttgggcattgttattgaagctccatcgtgttcagacctcgagtgcataggttcaaacacgcagttgtgtaaactttggggagcaaaaccggat-ctgggt 39777461  T
Q  150 tgcaccggaggtccaccggaaatttgctttcatgtgagttgctttttgtcacggcacaacaactctaatattctatctttcctatctatccgaaatctat 249  Q
    || ||||||||||||||| ||||| ||| ||| | |   || ||||||||| |||||||||| ||   | |||||||||||||| |||||| |||||||     
T  39777462 tgtaccggaggtccaccgaaaattcgctctcaag-gcaatggtttttgtcatggcacaacaattc---tcttctatctttcctagctatccaaaatctaa 39777557  T
Q  250 ttcctattaatatttccaac 269  Q
    || || ||||||||||||||    
T  39777558 tttctcttaatatttccaac 39777577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 29360204 - 29360330
Alignment:
Q  56 gcattgtttgtgaagctccaacgtgttag-cctcgagtgcacgagttcagacacgtagttgtgtaaactttagagagcaaaatcagatattggattgcac 154  Q
    ||||||||| |||||||||| |||||| | |||| ||||||||| |||||||||| |||||||||||| ||   |||||||||| |||||||| ||||||    
T  29360204 gcattgtttatgaagctccatcgtgtttggcctcaagtgcacgaattcagacacgcagttgtgtaaaccttgaggagcaaaatcggatattgggttgcac 29360303  T
Q  155 cggaggtccaccggaaatttgctttca 181  Q
    ||||||||||||| |||||||||||||    
T  29360304 cggaggtccaccgaaaatttgctttca 29360330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 41 - 269
Target Start/End: Original strand, 5716838 - 5717063
Alignment:
Q  41 tctcaattatgttgggcattgtttgtgaagctccaacgtgttagcct-cgagtgcacgagttcagacacgtagttgtgtaaactttagagagcaaaatca 139  Q
    ||||||||||  |||||||| |||||||||||||| ||| || | || |||||| | ||||| ||||||| ||||||||||| ||| | ||||||||||     
T  5716838 tctcaattattatgggcattatttgtgaagctccatcgtttttgacttcgagtggatgagtttagacacgcagttgtgtaaattttggggagcaaaatcg 5716937  T
Q  140 gatattggattgcaccggaggtccaccggaaatttgctttcatgtgagttgctttttgtcacggcacaacaactctaatattctatctttcctatctatc 239  Q
    ||  |||| |||||||||| || |||||||||||||| |||| |  || || |||||  ||||||||||||||||   | |||||||||||||| || ||    
T  5716938 ga-cttgggttgcaccggaagtacaccggaaatttgcattcagggcag-tggtttttaccacggcacaacaactc---tcttctatctttcctaactctc 5717032  T
Q  240 cgaaatcta-tttcctattaatatttccaac 269  Q
      || |||| ||| || ||||||||||||||    
T  5717033 taaattctagtttactcttaatatttccaac 5717063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 3358 - 3228
Alignment:
Q  52 ttgggcattgtttgtgaagctccaacgtgttag-cctcgagtgcacgagttcagacacgtagttgtgtaaactttagagagcaaaatcagatattggatt 150  Q
    |||| |||| |||||||||||||| |||||| | ||||||||||||| ||||||||||| | |||| ||||| ||   ||| |||||| ||||||| |||    
T  3358 ttggacattatttgtgaagctccatcgtgtttgacctcgagtgcacgggttcagacacgaaattgtataaaccttgaggagtaaaatcggatattgaatt 3259  T
Q  151 gcaccggaggtccaccggaaatttgctttca 181  Q
    ||||||||| | ||||  |||||||||||||    
T  3258 gcaccggagtttcaccaaaaatttgctttca 3228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 25080103 - 25080007
Alignment:
Q  86 ctcgagtgcacgagttcagacacgtagttgtgtaaactttagagagcaaaatcaga-tattggattgcaccggaggtccaccggaaatttgctttca 181  Q
    |||||||||||||||||||||||  | |||||||||| |||  ||| |||| | |  |||||| |||||||||||||||| ||||||||||||||||    
T  25080103 ctcgagtgcacgagttcagacacacaattgtgtaaaccttacggagaaaaacccgggtattgggttgcaccggaggtccagcggaaatttgctttca 25080007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 27049173 - 27049213
Alignment:
Q  105 acacgtagttgtgtaaactttagagagcaaaatcagatatt 145  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  27049173 acacgtagttgtgtaaactttggagagcaaaaccagatatt 27049213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 179
Target Start/End: Complemental strand, 18982388 - 18982262
Alignment:
Q  52 ttgggcattgtttgtgaagctccaacgtgttagcctcgagtgcacgagttcagacacgtagttgtgtaaactttagagagcaaaatcagatattggattg 151  Q
    ||||| ||||||||||||||||||| |||||  ||||||||||||| | |||||||| |||||  |||| ||||   ||||||||||  |||| |||||     
T  18982388 ttgggtattgtttgtgaagctccaatgtgttgacctcgagtgcacg-ggtcagacacatagttacgtaacctttgaggagcaaaatcgaatatgggatta 18982290  T
Q  152 caccggaggtccaccggaaatttgcttt 179  Q
     | |||||||| | || |||||||||||    
T  18982289 tatcggaggtctatcgaaaatttgcttt 18982262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 40709193 - 40709267
Alignment:
Q  84 gcctcgagtgcacgagttcagacacgtagttgtgtaaactttagagagcaaaatcagatattggattgcaccgga 158  Q
    |||||||||||| | ||||||||| | |||  |||||||||| | |||||||| | |||||||| ||||||||||    
T  40709193 gcctcgagtgcatgggttcagacatgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccgga 40709267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 15155 - 15218
Alignment:
Q  8 gtcaaaaatcaagttcattattttatattttattctcaattatgttgggcattgtttgtgaagct 72  Q
    ||||||||| ||||||||  |||  |||||||||||||||||| ||||  |||||||||||||||    
T  15155 gtcaaaaattaagttcatgctttc-tattttattctcaattattttggatattgtttgtgaagct 15218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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