View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16626_low_31 (Length: 222)

Name: NF16626_low_31
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16626_low_31
NF16626_low_31
[»] chr1 (2 HSPs)
chr1 (18-139)||(31477793-31477927)
chr1 (136-207)||(31478464-31478532)
[»] chr8 (2 HSPs)
chr8 (84-139)||(14196599-14196654)
chr8 (91-139)||(43041116-43041163)
[»] chr7 (1 HSPs)
chr7 (91-139)||(37748004-37748052)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 31477793 - 31477927
Alignment:
Q  18 ccaattatccttaggccttcataaattagcaaagtagattatgaagaatcaagctagta-------------agaaaatgattatcaagcctcgtgattt 104  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||    
T  31477793 ccaattattcttaggccttcataaattagcaaagtagattatgaagaatcaagctagtagcaaggcttgagaagaaaatgattatcaagcctcgtgattt 31477892  T
Q  105 tagttttgttccaagttaagatgtttgtagaatct 139  Q
    ||||||||||||||||||||||||| |||||||||    
T  31477893 tagttttgttccaagttaagatgttagtagaatct 31477927  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 31478464 - 31478532
Alignment:
Q  136 atctacaagcttttgatgcaacaaccaccttgtatttcccctatttctttgtcctactctctatctctctct 207  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  31478464 atctacaagcttttgatgcaac---caccttgtatttcccctatttctttgtcctactctctatctctctct 31478532  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 14196599 - 14196654
Alignment:
Q  84 gattatcaagcctcgtgattttagttttgttccaagttaagatgtttgtagaatct 139  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  14196599 gattatcaagccccgtgattttagttttgttccaatttaagatgtttgtagaatct 14196654  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 43041116 - 43041163
Alignment:
Q  91 aagcctcgtgattttagttttgttccaagttaagatgtttgtagaatct 139  Q
    ||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  43041116 aagcctcgtgattttag-tttgttccaatttaagatgttagtagaatct 43041163  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 37748052 - 37748004
Alignment:
Q  91 aagcctcgtgattttagttttgttccaagttaagatgtttgtagaatct 139  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||    
T  37748052 aagcctcgtgattttagttttgttccaatttaagatgttagtagaatct 37748004  T

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