View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16626_low_4 (Length: 455)
Name: NF16626_low_4
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16626_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Original strand, 39975476 - 39975905
Alignment:
| Q |
11 |
atcatcaatagcattttttcaaattactaacttgtggaacaatcccttcattccctgcaagcatcatatacttatccctcctagtaaaatttgtacactc |
110 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975476 |
atcatcaatagcattttttcaaattactaacttgttgaacaatcccttcattccctgcaagcatcatatacttatccctcctagtaaaatttgtacactc |
39975575 |
T |
|
| Q |
111 |
aaacctcaaagcatcacccaattgtttctgtatataattagccacttcaacacttgactttcctccagcacatgtaagttctttaggtaccttcccaaga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975576 |
aaacctcaaagcatcacccaattgtttctgtatataattagccacttcaacacttgactttcctccagcacatgtaagttctttaggtaccttcccaaga |
39975675 |
T |
|
| Q |
211 |
atttgaatatgataacttggcttaggattcatcaagnnnnnnntaggatccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975676 |
atttgaatatgataacttggcttaggattcatcaagaaaaaaataggatccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgag |
39975775 |
T |
|
| Q |
311 |
tattcattgccacaggcactatctcattagccaactcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaac |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975776 |
tattcattgccacaggcactatctcattagccaactcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaac |
39975875 |
T |
|
| Q |
411 |
aactaaatcaccttctcttagtaacttttg |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
39975876 |
aactaaatcaccttctcttagtaacttttg |
39975905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 407
Target Start/End: Original strand, 25552899 - 25552961
Alignment:
| Q |
345 |
ctcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggaca |
407 |
Q |
| |
|
|||||||||||| | ||||||||||| ||| || ||||||||||| ||||||||||| ||||| |
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| T |
25552899 |
ctcagcaaacaaaggactaaaccttagcaagtaaggttctctacaagttgttccttctggaca |
25552961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 55 - 430
Target Start/End: Original strand, 16147298 - 16147673
Alignment:
| Q |
55 |
ccttcattccctgcaagcatcatatacttatccctcctagtaaaatttgtacactcaaacctcaaagcatcacccaattgtttctgtatataattagcca |
154 |
Q |
| |
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||||||||||| || | ||||||||| ||||||||||| |||| ||||||||||||||||| |||||||||||||| | | | |||||||||||||||| |
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| T |
16147298 |
ccttcattcccagctaacatcatatatttatccctccttgtaatatttgtacactcaaaccctaaagcatcacccaactctctttgtatataattagcca |
16147397 |
T |
|
| Q |
155 |
cttcaacacttgactttcctccagcacatgtaagttctttaggtaccttcccaagaatttgaatatgataacttggcttaggattcatcaagnnnnnnnt |
254 |
Q |
| |
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|||||| | || ||||| |||||||| || |||||||| |||||||| |||| | || ||||| |||||| ||| ||||||||||| |
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| T |
16147398 |
cttcaaaaggagattttccaccagcacaagtgagttcttttggtaccttttcaagtacttcaatattataactaggccatggattcatcaaaaatagaaa |
16147497 |
T |
|
| Q |
255 |
aggatccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccacaggcactatctcattagccaactcagcaaac |
354 |
Q |
| |
|
|| |||||||| || ||||| || ||||| || ||||||||||| || |||| | |||||| ||||| || || ||||||| ||| | |||||||| |
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| T |
16147498 |
agagtccaaacattttaatccactagctgttgtaccataaaacatactcacattaacattcatagccactggaacaatctcatcagcaagttcagcaaaa |
16147597 |
T |
|
| Q |
355 |
aatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcaccttctctta |
430 |
Q |
| |
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| ||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
16147598 |
agtgaactaaaccttaataaataaggttccctacaagttgttccttcaggacaaacaactaaatcaccttcactta |
16147673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 58 - 425
Target Start/End: Complemental strand, 16195634 - 16195267
Alignment:
| Q |
58 |
tcattccctgcaagcatcatatacttatccctcctagtaaaatttgtacactcaaacctcaaagcatcacccaattgtttctgtatataattagccactt |
157 |
Q |
| |
|
|||||||| || | ||||||||| ||||||||||| |||| ||| || |||||||| | ||||||||||| ||||| |||||||||||||| |||||||| |
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|
| T |
16195634 |
tcattcccagctaacatcatatatttatccctccttgtaatattggtgcactcaaatcccaaagcatcactcaattctttctgtatataatcagccactt |
16195535 |
T |
|
| Q |
158 |
caacacttgactttcctccagcacatgtaagttctttaggtaccttcccaagaatttgaatatgataacttggcttaggattcatcaagnnnnnnntagg |
257 |
Q |
| |
|
||| | |||||||| |||||||| || |||||||| || || || |||| |||| ||| | |||||||||| ||||||||||| ||| |
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| T |
16195534 |
caaaaggagactttccaccagcacaagtgagttcttttggaactttatcaagcatttcaatgttataacttggccatggattcatcaaaaatagaaaagg |
16195435 |
T |
|
| Q |
258 |
atccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccacaggcactatctcattagccaactcagcaaacaat |
357 |
Q |
| |
|
|||||||| || ||||| || ||||| || ||||||||||| || |||| | |||||| ||||| || || ||||||| ||| | |||||||| | | |
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|
| T |
16195434 |
gtccaaacattttaatccactagctgttgtaccataaaacatactcacattatcattcatagccactggaacaatctcatcagcaatttcagcaaaaagt |
16195335 |
T |
|
| Q |
358 |
gaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcaccttc |
425 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||| |||||||||||||| || ||||||||||||||||| |
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|
| T |
16195334 |
gaactaaaccttaataaataaggttccctacaagttgttccttcagggcacacaactaaatcaccttc |
16195267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 424
Target Start/End: Original strand, 38792285 - 38792363
Alignment:
| Q |
346 |
tcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcacctt |
424 |
Q |
| |
|
|||| |||||| || ||||||||||| ||||| ||||||||||| || || ||||| ||||| ||||||| ||| |||| |
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| T |
38792285 |
tcagaaaacaaagagctaaaccttaataaataaggttctctacaagtggtcccttctggacacacaactacatcccctt |
38792363 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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