View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16626_low_5 (Length: 443)

Name: NF16626_low_5
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16626_low_5
NF16626_low_5
[»] chr1 (13 HSPs)
chr1 (145-428)||(51490408-51490691)
chr1 (28-99)||(7765298-7765369)
chr1 (44-112)||(25061282-25061350)
chr1 (44-99)||(4347030-4347085)
chr1 (47-100)||(29759710-29759763)
chr1 (60-99)||(10470661-10470700)
chr1 (59-100)||(7301821-7301862)
chr1 (59-99)||(5410710-5410750)
chr1 (47-99)||(20800292-20800344)
chr1 (47-99)||(35569217-35569269)
chr1 (67-99)||(43134529-43134561)
chr1 (43-99)||(43730059-43730115)
chr1 (47-99)||(48510967-48511019)
[»] chr7 (13 HSPs)
chr7 (13-100)||(37148610-37148697)
chr7 (28-99)||(4228584-4228655)
chr7 (27-112)||(45823242-45823327)
chr7 (44-112)||(1766478-1766546)
chr7 (20-112)||(38494245-38494337)
chr7 (49-112)||(16079460-16079523)
chr7 (71-112)||(17908245-17908286)
chr7 (71-100)||(33746469-33746498)
chr7 (47-100)||(40491669-40491722)
chr7 (43-99)||(20088921-20088977)
chr7 (47-99)||(38230124-38230176)
chr7 (44-112)||(42752179-42752247)
chr7 (47-99)||(48459766-48459818)
[»] chr2 (15 HSPs)
chr2 (14-100)||(37531803-37531889)
chr2 (13-99)||(26806267-26806353)
chr2 (44-112)||(23359929-23359997)
chr2 (47-112)||(3853944-3854009)
chr2 (23-87)||(14531978-14532042)
chr2 (28-99)||(42770408-42770479)
chr2 (47-99)||(34433318-34433370)
chr2 (60-99)||(8170369-8170408)
chr2 (48-99)||(42089540-42089591)
chr2 (47-100)||(12110918-12110971)
chr2 (70-99)||(25747894-25747923)
chr2 (47-99)||(1945051-1945103)
chr2 (72-100)||(11759800-11759828)
chr2 (44-100)||(23377545-23377601)
chr2 (43-99)||(30599916-30599972)
[»] chr3 (19 HSPs)
chr3 (25-100)||(53567945-53568020)
chr3 (20-99)||(30301203-30301282)
chr3 (44-109)||(7012672-7012737)
chr3 (20-96)||(52736772-52736848)
chr3 (45-112)||(10852714-10852781)
chr3 (44-99)||(25181242-25181297)
chr3 (47-99)||(31084242-31084294)
chr3 (60-99)||(48189456-48189495)
chr3 (43-109)||(23918873-23918939)
chr3 (71-112)||(14651103-14651144)
chr3 (70-99)||(30811546-30811575)
chr3 (43-100)||(33989825-33989882)
chr3 (47-100)||(34561143-34561196)
chr3 (70-99)||(35425391-35425420)
chr3 (47-112)||(49526670-49526735)
chr3 (47-99)||(23496352-23496404)
chr3 (48-100)||(42644298-42644350)
chr3 (71-99)||(44939430-44939458)
chr3 (47-99)||(50664793-50664845)
[»] chr5 (6 HSPs)
chr5 (27-97)||(43152376-43152446)
chr5 (28-99)||(19204015-19204086)
chr5 (44-112)||(22811072-22811140)
chr5 (59-112)||(24036634-24036687)
chr5 (64-100)||(14067054-14067090)
chr5 (47-99)||(22482238-22482290)
[»] chr8 (14 HSPs)
chr8 (27-99)||(12124745-12124817)
chr8 (28-112)||(26490958-26491041)
chr8 (44-100)||(19649226-19649282)
chr8 (44-99)||(33588760-33588815)
chr8 (48-99)||(3467577-3467628)
chr8 (20-99)||(29970818-29970897)
chr8 (48-99)||(36779435-36779486)
chr8 (70-112)||(40792205-40792247)
chr8 (59-100)||(7601892-7601933)
chr8 (59-100)||(10552922-10552963)
chr8 (47-100)||(43550934-43550987)
chr8 (64-112)||(2778342-2778390)
chr8 (47-99)||(22936807-22936859)
chr8 (44-112)||(31246316-31246384)
[»] scaffold0005 (1 HSPs)
scaffold0005 (28-94)||(219669-219735)
[»] chr4 (13 HSPs)
chr4 (28-94)||(14597643-14597709)
chr4 (44-112)||(22699759-22699827)
chr4 (44-112)||(22980703-22980771)
chr4 (44-112)||(22994290-22994358)
chr4 (48-112)||(36150625-36150689)
chr4 (47-99)||(40286302-40286354)
chr4 (20-99)||(28947763-28947842)
chr4 (59-99)||(5835782-5835822)
chr4 (47-99)||(13167545-13167597)
chr4 (47-99)||(16566325-16566377)
chr4 (44-112)||(38306028-38306096)
chr4 (47-99)||(39636805-39636857)
chr4 (47-99)||(54487234-54487286)
[»] chr6 (6 HSPs)
chr6 (27-99)||(8551106-8551178)
chr6 (27-99)||(3605765-3605837)
chr6 (59-100)||(25208729-25208770)
chr6 (70-112)||(6208064-6208106)
chr6 (69-99)||(32599476-32599506)
chr6 (47-99)||(16548174-16548226)
[»] scaffold0172 (1 HSPs)
scaffold0172 (47-100)||(15270-15323)


Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 145 - 428
Target Start/End: Complemental strand, 51490691 - 51490408
Alignment:
Q  145 atacaacctaatataacccgatatctgtacaccccaacattaattaacaaataaaaacatgcattttttctctcggttctaatcactcaacagtgtcgcg 244  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  51490691 atacaacctaatataacccgatatttgtacaccccaacattaattaacaaataaaaacatgcattttttctcttggttctgatcactcaacagtgtcgcg 51490592  T
Q  245 tgcaaaacaagtctgtgtgcagacataccgtggttttcaatctatgggatcggtcactcccaagtcccaaatgattttggcttttggaaggtgaaccggg 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  51490591 tgcaaaacaagtctgtgtgcagacataccgtggttttcaatctatgggatcggtcactcccaagtcccaaatggttttggcttttggaaggtgaaccggg 51490492  T
Q  345 tgattaaagtgtaaaatatagnnnnnnnnnacaataaactgtttacaagaatatccagcagtcgttgatttaataagttgtaaa 428  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51490491 tgattaaagtgtaaaatatagtttttttttacaataaactgtttacaagaatatccagcagtcgttgatttaataagttgtaaa 51490408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 7765369 - 7765298
Alignment:
Q  28 aatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    |||||||||||||| ||| ||||||||| | |||||| ||||||| ||||||||||||| ||| ||||||||    
T  7765369 aatcacttctatcataaaagtatccaaacaaaaatcacttttcatccaactcacttttattcataatcaatt 7765298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 25061282 - 25061350
Alignment:
Q  44 aaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    |||||||||||| | |||||| |||   |||||||||||||||| ||||||||||| ||||||||||||    
T  25061282 aaggtatccaaacataaatcaatttatgttcaactcacttttaaccaaaatcaattcaaccaaaatcaa 25061350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 4347030 - 4347085
Alignment:
Q  44 aaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    |||||||||||| | |||||| ||| |||||||||||||||||| |||||||||||    
T  4347030 aaggtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaatt 4347085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 29759710 - 29759763
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaattt 100  Q
    ||||||||| | |||||||||| |||||||||||||||||| || |||||||||    
T  29759710 gtatccaaacataaatcattttacattcaactcacttttaaccataatcaattt 29759763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 10470661 - 10470700
Alignment:
Q  60 aatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  10470661 aatcaatttacattcaactcacttttaatcaaaatcaatt 10470700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 7301862 - 7301821
Alignment:
Q  59 aaatcatttttcattcaactcacttttaatcaaaatcaattt 100  Q
    |||||||||| ||||||| |||||||||| ||||||||||||    
T  7301862 aaatcattttacattcaaatcacttttaaacaaaatcaattt 7301821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 5410710 - 5410750
Alignment:
Q  59 aaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    |||||| ||| ||| ||||||||||||||||||||||||||    
T  5410710 aaatcaatttacatccaactcacttttaatcaaaatcaatt 5410750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 20800344 - 20800292
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  20800344 gtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 20800292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 35569269 - 35569217
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  35569269 gtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 35569217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 43134529 - 43134561
Alignment:
Q  67 tttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||||||||||||||| |||||||||||    
T  43134529 tttcattcaactcacttttaaccaaaatcaatt 43134561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 43730115 - 43730059
Alignment:
Q  43 aaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||||||| | |||||| ||  || ||||||||||||||| |||||||||||    
T  43730115 aaaggtatccaaacacaaatcaattgacactcaactcacttttaaccaaaatcaatt 43730059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 48510967 - 48511019
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  48510967 gtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 48511019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 37148697 - 37148610
Alignment:
Q  13 aatatcattcatacaaatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaattt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  37148697 aatatcattcatacaaatcacttctatcacaaagctatccaaacagaaatcatttttcattcaactcatttttaatcaaaatcaattt 37148610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 4228584 - 4228655
Alignment:
Q  28 aatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    |||||||||||||  ||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||    
T  4228584 aatcacttctatcttaaaggtatccaaacataaatcacttttcattcaactcacttttaatcaaaatcaatt 4228655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 45823242 - 45823327
Alignment:
Q  27 aaatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    ||||||||||||||  ||| ||||||||| | ||||||  ||||||||||||||||||| ||| ||||||||| || |||||||||    
T  45823242 aaatcacttctatcgaaaatgtatccaaacataaatcacatttcattcaactcacttttgatcgaaatcaattcaatcaaaatcaa 45823327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 1766478 - 1766546
Alignment:
Q  44 aaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    |||||||||||| | |||||| |||   ||||||||||||||||||||||||||||||| |||||||||    
T  1766478 aaggtatccaaatataaatcaatttaggttcaactcacttttaatcaaaatcaatttaatcaaaatcaa 1766546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 38494245 - 38494337
Alignment:
Q  20 ttcatacaaatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    ||||||||||||||||||||    |||||| ||||| | ||| || ||  |||||||||||||||||| ||||||||||| || |||||||||    
T  38494245 ttcatacaaatcacttctattgtgaaggtaaccaaacataaaccacttcacattcaactcacttttaaccaaaatcaattcaaacaaaatcaa 38494337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 16079460 - 16079523
Alignment:
Q  49 atccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    ||||||| | |||||| ||||||||||||||||||| || |||||||||||  || ||||||||    
T  16079460 atccaaacataaatcacttttcattcaactcactttaaaccaaaatcaattctactaaaatcaa 16079523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 17908245 - 17908286
Alignment:
Q  71 attcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    |||||||||| |||||| |||||||||||||| |||||||||    
T  17908245 attcaactcaattttaaccaaaatcaatttaatcaaaatcaa 17908286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 100
Target Start/End: Original strand, 33746469 - 33746498
Alignment:
Q  71 attcaactcacttttaatcaaaatcaattt 100  Q
    ||||||||||||||||||||||||||||||    
T  33746469 attcaactcacttttaatcaaaatcaattt 33746498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 40491669 - 40491722
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaattt 100  Q
    ||||||||| | |||||| ||| | ||||||||||||||| |||||||||||||    
T  40491669 gtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaattt 40491722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 20088921 - 20088977
Alignment:
Q  43 aaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||| ||||| | |||||| ||| | |||||||||||||||| |||||||||||    
T  20088921 aaaggtaaccaaacataaatcactttacgttcaactcacttttaaccaaaatcaatt 20088977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 38230124 - 38230176
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  38230124 gtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 38230176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 42752247 - 42752179
Alignment:
Q  44 aaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    |||||||||||| | |||||| ||  ||||||||||||||||||  ||||||||||  | |||||||||    
T  42752247 aaggtatccaaacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaa 42752179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 48459766 - 48459818
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  48459766 gtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 48459818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 37531889 - 37531803
Alignment:
Q  14 atatcattcatacaaatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaattt 100  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||    
T  37531889 atataattcatacaaatcacttctatcacaaaggtatccaaacagaaatcatttttcattcaactcactttgaatgaaaatcaattt 37531803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 26806353 - 26806267
Alignment:
Q  13 aatatcattcatacaaatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    |||||| ||||||  |||||||||||||  ||||||||||||| | |||||| |||||| |||||||||||||||||||||||||||    
T  26806353 aatatctttcatatgaatcacttctatcttaaaggtatccaaacataaatcacttttcactcaactcacttttaatcaaaatcaatt 26806267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 23359997 - 23359929
Alignment:
Q  44 aaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    |||||||||||| | |||||| ||| |||||||||||||||||| |||||||||||  |||||||||||    
T  23359997 aaggtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctaccaaaatcaa 23359929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 3853944 - 3854009
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    ||||||||| | |||||| ||| ||||||||||||||||||||||||||||||  | |||||||||    
T  3853944 gtatccaaacataaatcaatttacattcaactcacttttaatcaaaatcaattctatcaaaatcaa 3854009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 14532042 - 14531978
Alignment:
Q  23 atacaaatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaa 87  Q
    ||||||||||||| |||   ||||||||||||| | |||||| ||||||||||||||||||||||    
T  14532042 atacaaatcacttttattgtaaaggtatccaaacacaaatcacttttcattcaactcacttttaa 14531978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 42770479 - 42770408
Alignment:
Q  28 aatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    |||||||| ||||  |||| |||||||| | | |||| ||||||||||||||||||||||||||||| ||||    
T  42770479 aatcacttttatcttaaagatatccaaacatagatcaattttcattcaactcacttttaatcaaaatgaatt 42770408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 34433370 - 34433318
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | |||||| ||  ||||||||||||||||||||||||||||||    
T  34433370 gtatccaaacataaatcaattcacattcaactcacttttaatcaaaatcaatt 34433318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 8170369 - 8170408
Alignment:
Q  60 aatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  8170369 aatcaatttacattcaactcacttttaatcaaaatcaatt 8170408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 42089591 - 42089540
Alignment:
Q  48 tatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    |||||||| | |||||| ||  ||||||||||||||||||||||||||||||    
T  42089591 tatccaaacataaatcaattcacattcaactcacttttaatcaaaatcaatt 42089540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 12110918 - 12110971
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaattt 100  Q
    ||||||||| | |||||| |||  ||||||||||||||||| ||||||||||||    
T  12110918 gtatccaaacataaatcactttatattcaactcacttttaaccaaaatcaattt 12110971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 25747923 - 25747894
Alignment:
Q  70 cattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||||||||||||||||||||||||    
T  25747923 cattcaactcacttttaatcaaaatcaatt 25747894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 1945103 - 1945051
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  1945103 gtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 1945051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 100
Target Start/End: Complemental strand, 11759828 - 11759800
Alignment:
Q  72 ttcaactcacttttaatcaaaatcaattt 100  Q
    |||||||||||||||||||||||||||||    
T  11759828 ttcaactcacttttaatcaaaatcaattt 11759800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 23377545 - 23377601
Alignment:
Q  44 aaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaattt 100  Q
    |||||||||||| | ||||||  || |||||||||||||||||| |||||| |||||    
T  23377545 aaggtatccaaacataaatcaacttacattcaactcacttttaaccaaaattaattt 23377601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 30599972 - 30599916
Alignment:
Q  43 aaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||||||| | |||||| ||  || ||||||||||||||| |||||||||||    
T  30599972 aaaggtatccaaacacaaatcaattgacactcaactcacttttaaccaaaatcaatt 30599916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 53567945 - 53568020
Alignment:
Q  25 acaaatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaattt 100  Q
    |||||| |||||||||| ||||||||||||| | |||| | |||||||||||||||||||||||||||||||||||    
T  53567945 acaaataacttctatcataaaggtatccaaacataaattacttttcattcaactcacttttaatcaaaatcaattt 53568020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 30301282 - 30301203
Alignment:
Q  20 ttcatacaaatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    |||||||||||||||||||| |  |||| ||||||| | || ||| | | ||||||||||||||||||||||||||||||    
T  30301282 ttcatacaaatcacttctattatgaagggatccaaacataattcactatacattcaactcacttttaatcaaaatcaatt 30301203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 7012672 - 7012737
Alignment:
Q  44 aaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaat 109  Q
    |||||||||||| | |||||| ||| |||||||||||||||||| |||||||||||  ||||||||    
T  7012672 aaggtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctaccaaaat 7012737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 52736772 - 52736848
Alignment:
Q  20 ttcatacaaatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatca 96  Q
    |||||||||||||||| |||   ||| ||||||||| | |||||| |||||||| | ||||||||||||||||||||    
T  52736772 ttcatacaaatcacttttattgtaaaagtatccaaacacaaatcacttttcattaacctcacttttaatcaaaatca 52736848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 10852781 - 10852714
Alignment:
Q  45 aggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    ||||| ||||| | |||||| ||| |||||||||||||||||| |||||||||||  |||||||||||    
T  10852781 aggtagccaaacataaatcactttacattcaactcacttttaaccaaaatcaattataccaaaatcaa 10852714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 25181242 - 25181297
Alignment:
Q  44 aaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    |||||||||||| | |||| ||||| |||| |||||||||||||||||||||||||    
T  25181242 aaggtatccaaacataaataattttacattaaactcacttttaatcaaaatcaatt 25181297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 31084242 - 31084294
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | |||||| ||  ||||||||||||||||||||||||||||||    
T  31084242 gtatccaaacataaatcaattcacattcaactcacttttaatcaaaatcaatt 31084294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 48189495 - 48189456
Alignment:
Q  60 aatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  48189495 aatcaatttacattcaactcacttttaatcaaaatcaatt 48189456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 23918873 - 23918939
Alignment:
Q  43 aaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaat 109  Q
    ||||||| ||||| | |||||| ||| |||||||||||||||||| |||||| ||||  ||||||||    
T  23918873 aaaggtaaccaaacataaatcactttacattcaactcacttttaaccaaaattaattctaccaaaat 23918939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 14651144 - 14651103
Alignment:
Q  71 attcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    |||||||||||||||||||||||||||||  | |||||||||    
T  14651144 attcaactcacttttaatcaaaatcaattctatcaaaatcaa 14651103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 30811575 - 30811546
Alignment:
Q  70 cattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||||||||||||||||||||||||    
T  30811575 cattcaactcacttttaatcaaaatcaatt 30811546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 33989825 - 33989882
Alignment:
Q  43 aaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaattt 100  Q
    |||| |||||||| | ||||||  |||||||||||  |||||||||||||||||||||    
T  33989825 aaagttatccaaacataaatcacgtttcattcaacaaacttttaatcaaaatcaattt 33989882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 34561143 - 34561196
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaattt 100  Q
    ||||||||| | |||||| ||  |||||||||||||||||| ||||||||||||    
T  34561143 gtatccaaacataaatcaattcgcattcaactcacttttaaccaaaatcaattt 34561196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Original strand, 35425391 - 35425420
Alignment:
Q  70 cattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||||||||||||||||||||||||    
T  35425391 cattcaactcacttttaatcaaaatcaatt 35425420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 49526735 - 49526670
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    ||||||||| | |||||| ||| || |||| ||||||||||||||||||||||  | |||||||||    
T  49526735 gtatccaaacataaatcaatttacaatcaattcacttttaatcaaaatcaattctatcaaaatcaa 49526670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 23496352 - 23496404
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  23496352 gtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 23496404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 42644298 - 42644350
Alignment:
Q  48 tatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaattt 100  Q
    |||||||| | |||||| ||| ||||||||||||||||||  |||||||||||    
T  42644298 tatccaaacataaatcactttacattcaactcacttttaactaaaatcaattt 42644350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 44939458 - 44939430
Alignment:
Q  71 attcaactcacttttaatcaaaatcaatt 99  Q
    |||||||||||||||||||||||||||||    
T  44939458 attcaactcacttttaatcaaaatcaatt 44939430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 50664793 - 50664845
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  50664793 gtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 50664845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 43152446 - 43152376
Alignment:
Q  27 aaatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaa 97  Q
    |||||||||||||| |||||||||||||| | |||||| |||||||||||||||||||||||  |||||||    
T  43152446 aaatcacttctatcgcaaaggtatccaaacataaatcacttttcattcaactcacttttaattgaaatcaa 43152376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 19204086 - 19204015
Alignment:
Q  28 aatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    |||||||||||||| ||| ||||||||| | |||||| ||||||| ||||||||||||| ||| ||||||||    
T  19204086 aatcacttctatcataaaagtatccaaacaaaaatcacttttcatccaactcacttttattcataatcaatt 19204015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 22811072 - 22811140
Alignment:
Q  44 aaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    |||||||||||| | |||||| ||| |||||||||||||||||| |||||||||||  ||||| |||||    
T  22811072 aaggtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctaccaagatcaa 22811140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 24036634 - 24036687
Alignment:
Q  59 aaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    |||||||||| |||||||||||||||| |||||||||||||  | |||||||||    
T  24036634 aaatcattttacattcaactcacttttcatcaaaatcaattctatcaaaatcaa 24036687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 14067090 - 14067054
Alignment:
Q  64 atttttcattcaactcacttttaatcaaaatcaattt 100  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  14067090 attttacatttaactcacttttaatcaaaatcaattt 14067054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 22482238 - 22482290
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  22482238 gtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 22482290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 12124817 - 12124745
Alignment:
Q  27 aaatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||||||||| ||||||||||||| | |||| | ||||||||||||||||| |||||| |||||||||    
T  12124817 aaatcacttctatcataaaggtatccaaacataaataacttttcattcaactcactattaatcgaaatcaatt 12124745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 26490958 - 26491041
Alignment:
Q  28 aatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    |||||||||||| | ||||||||||||| | |||||| ||| || ||||||||||||||| |||||||||||  |||||||||||    
T  26490958 aatcacttctat-ataaaggtatccaaacacaaatcaatttacactcaactcacttttaaccaaaatcaattctaccaaaatcaa 26491041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 19649226 - 19649282
Alignment:
Q  44 aaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaattt 100  Q
    |||||||||||| | |||||| ||| |||||||||||||||||| ||||||||||||    
T  19649226 aaggtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattt 19649282  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 33588760 - 33588815
Alignment:
Q  44 aaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    |||||||||||| | |||| ||||| |||| |||||||||||||||||||||||||    
T  33588760 aaggtatccaaacataaataattttacattaaactcacttttaatcaaaatcaatt 33588815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 3467577 - 3467628
Alignment:
Q  48 tatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    |||||||| |||||||| ||  |||||||||||||||||| |||||||||||    
T  3467577 tatccaaacagaaatcaattcacattcaactcacttttaaccaaaatcaatt 3467628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 29970818 - 29970897
Alignment:
Q  20 ttcatacaaatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||||||| ||||||   ||||||||||||| | |||||| |||  | |||||||||||||||  ||||||||||    
T  29970818 ttcatacaaatcatttctattgtaaaggtatccaaacataaatcactttaaactcaactcacttttaactaaaatcaatt 29970897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 36779435 - 36779486
Alignment:
Q  48 tatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    |||||||| | |||| | ||| ||||||||||||||||||||||||||||||    
T  36779435 tatccaaacataaattactttacattcaactcacttttaatcaaaatcaatt 36779486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 40792247 - 40792205
Alignment:
Q  70 cattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    ||||||||||||||||||||||||||||||  | |||||||||    
T  40792247 cattcaactcacttttaatcaaaatcaattatatcaaaatcaa 40792205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 7601933 - 7601892
Alignment:
Q  59 aaatcatttttcattcaactcacttttaatcaaaatcaattt 100  Q
    |||||||||| ||||||| ||||||||| |||||||||||||    
T  7601933 aaatcattttacattcaattcacttttagtcaaaatcaattt 7601892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 10552963 - 10552922
Alignment:
Q  59 aaatcatttttcattcaactcacttttaatcaaaatcaattt 100  Q
    |||||| ||| |||||||||||||||||| ||||||||||||    
T  10552963 aaatcaatttacattcaactcacttttaaccaaaatcaattt 10552922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 43550934 - 43550987
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaattt 100  Q
    ||||||||| | |||||| ||  |||||||||||||||||| ||||||||||||    
T  43550934 gtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattt 43550987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 2778390 - 2778342
Alignment:
Q  64 atttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    ||||| ||||||||||||||||||  ||||||||||||  |||||||||    
T  2778390 attttacattcaactcacttttaagtaaaatcaatttattcaaaatcaa 2778342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 22936859 - 22936807
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  22936859 gtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 22936807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 31246384 - 31246316
Alignment:
Q  44 aaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    |||||||||||| | |||||| ||  ||||||||||||||||||  ||||||||||  | |||||||||    
T  31246384 aaggtatccaaacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaa 31246316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 219669 - 219735
Alignment:
Q  28 aatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaat 94  Q
    |||||||||||||  |||| |||||||| | |||||| |||||||||||||||||||||||||||||    
T  219669 aatcacttctatcttaaagatatccaaacataaatcacttttcattcaactcacttttaatcaaaat 219735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 14597709 - 14597643
Alignment:
Q  28 aatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaat 94  Q
    |||||||||||||  |||| |||||||| | |||||| |||||||||||||||||||||||||||||    
T  14597709 aatcacttctatcttaaagatatccaaacataaatcacttttcattcaactcacttttaatcaaaat 14597643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 22699759 - 22699827
Alignment:
Q  44 aaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    |||||||||||| | |||||| ||| ||||||||| |||||||| |||||||||||  |||||||||||    
T  22699759 aaggtatccaaacataaatcactttacattcaacttacttttaaccaaaatcaattctaccaaaatcaa 22699827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 22980771 - 22980703
Alignment:
Q  44 aaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    |||||||||||| | |||||| ||| ||||||||| |||||||| |||||||||||  |||||||||||    
T  22980771 aaggtatccaaacataaatcactttacattcaacttacttttaaccaaaatcaattctaccaaaatcaa 22980703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 22994358 - 22994290
Alignment:
Q  44 aaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    |||||||||||| | |||||| ||| ||||||||| |||||||| |||||||||||  |||||||||||    
T  22994358 aaggtatccaaacataaatcactttacattcaacttacttttaaccaaaatcaattctaccaaaatcaa 22994290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 36150625 - 36150689
Alignment:
Q  48 tatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    |||||||| | |||||| ||| ||||||||||||||||||||||||||||||  | |||||||||    
T  36150625 tatccaaacataaatcactttacattcaactcacttttaatcaaaatcaattatatcaaaatcaa 36150689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 40286302 - 40286354
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | ||||||||||||| |||||||| ||||||||||||||||||    
T  40286302 gtatccaaacataaatcatttttcactcaactcaattttaatcaaaatcaatt 40286354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 28947842 - 28947763
Alignment:
Q  20 ttcatacaaatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    |||||||||| |||||||||    |||||| ||||| | |||||| ||| | |||||||||||||||| |||||||||||    
T  28947842 ttcatacaaaacacttctattttgaaggtaaccaaacataaatcactttacgttcaactcacttttaaccaaaatcaatt 28947763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 5835782 - 5835822
Alignment:
Q  59 aaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    |||||| ||||||||||| ||| ||||||||||||||||||    
T  5835782 aaatcacttttcattcaattcagttttaatcaaaatcaatt 5835822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 13167545 - 13167597
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  13167545 gtatccaaatataaatcaattcacattcaactcacttttaaccaaaatcaatt 13167597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 16566325 - 16566377
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  16566325 gtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 16566377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 38306028 - 38306096
Alignment:
Q  44 aaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    |||||||||||| | |||||| ||  ||||||||||||||||||  ||||||||||  | |||||||||    
T  38306028 aaggtatccaaacataaatcaattcgcattcaactcacttttaacaaaaatcaattctaacaaaatcaa 38306096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 39636805 - 39636857
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | |||||| ||  ||| ||||||||||||||||||||||||||    
T  39636805 gtatccaaacataaatcaattcacatccaactcacttttaatcaaaatcaatt 39636857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 54487286 - 54487234
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | |||||| ||| |||||||||||||||| ||| |||||||||    
T  54487286 gtatccaaacataaatcaatttacattcaactcacttttgatcgaaatcaatt 54487234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 8551178 - 8551106
Alignment:
Q  27 aaatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||||||||  |||||| |||||| | |||||| |||||| |||||||||||||||||| ||||||||    
T  8551178 aaatcacttctatcgtaaaggtgtccaaacataaatcacttttcactcaactcacttttaatcagaatcaatt 8551106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 3605837 - 3605765
Alignment:
Q  27 aaatcacttctatcacaaaggtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    |||||||||||||   | |||| |||||| | |||||| |||||| |||||||||||||||||||||||||||    
T  3605837 aaatcacttctatggtagaggtgtccaaacataaatcacttttcactcaactcacttttaatcaaaatcaatt 3605765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 25208729 - 25208770
Alignment:
Q  59 aaatcatttttcattcaactcacttttaatcaaaatcaattt 100  Q
    |||||||||| ||||||||||||||||||| |||||||||||    
T  25208729 aaatcattttacattcaactcacttttaattaaaatcaattt 25208770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 6208106 - 6208064
Alignment:
Q  70 cattcaactcacttttaatcaaaatcaatttaaccaaaatcaa 112  Q
    |||||||||||||||||||||||||||||| |  |||||||||    
T  6208106 cattcaactcacttttaatcaaaatcaattcactcaaaatcaa 6208064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 99
Target Start/End: Complemental strand, 32599506 - 32599476
Alignment:
Q  69 tcattcaactcacttttaatcaaaatcaatt 99  Q
    |||||||||||||||||||||||||||||||    
T  32599506 tcattcaactcacttttaatcaaaatcaatt 32599476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 16548174 - 16548226
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaatt 99  Q
    ||||||||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  16548174 gtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 16548226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 15323 - 15270
Alignment:
Q  47 gtatccaaagagaaatcatttttcattcaactcacttttaatcaaaatcaattt 100  Q
    ||||||||| | |||||| |||  ||||||||||||||||| ||||||||||||    
T  15323 gtatccaaacataaatcactttatattcaactcacttttaaccaaaatcaattt 15270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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