View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16626_low_9 (Length: 393)
Name: NF16626_low_9
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16626_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 42009494 - 42009859
Alignment:
| Q |
18 |
caaaggtgagacggaatcaccttggtgtttccacaaattgattcagacctgcttactaattgatttgttctttgttgatctgattccaaagattttcaac |
117 |
Q |
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| T |
42009494 |
caaaggtgagacgaaa-caccttggtgtttccacaaattgattcagacctgcttactaattgatttgttctttgttgatctgattccaaagattttcaac |
42009592 |
T |
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| Q |
118 |
cataacttcaatggtctaaataatatagaagcttgattaatctagtaattactatttaatcatttgagtgcaatacatcggacttatgtccgttattact |
217 |
Q |
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| T |
42009593 |
cataacttcaatggtctaaataatatagaagcttgattaatctagtaattactatttaatcatttgagtacaatacatcggacttatgtccgttattact |
42009692 |
T |
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| Q |
218 |
actgtgaatggagtgcccttgcacttaagtgtggttttggcacaacaaatattatgtgtaaatctggcttagaaacaaagcatttttgttggagaagaat |
317 |
Q |
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| T |
42009693 |
actgtgaatggagtgcccttgcacttaagtgtggttttggcacaacaaatattatgtgtaaatctggcttagaaacaaagcatttttgttggagaagaat |
42009792 |
T |
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| Q |
318 |
cacgtcttgaggggaccattccacccataagttcttttggatagtatattttctaatctactctctg |
384 |
Q |
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| T |
42009793 |
cacgtcttgaggggaccattccacccataagttcttttggatagtatattttctaatctactctctg |
42009859 |
T |
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