View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16627_high_10 (Length: 327)
Name: NF16627_high_10
Description: NF16627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16627_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 32423267 - 32422939
Alignment:
| Q |
1 |
aacctaactaggaaattgggaatattgaagagtactgtactatatatcaacaattaattgactacattaatgtattagtctcaattaag----------- |
89 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32423267 |
aacctaattaggaaattgggaattttgaagagtactgtactatatatcaacaattaattgactacattaatgtattagtctcaattaagtactgaaattt |
32423168 |
T |
|
| Q |
90 |
-----------caatcactcatcaacagattcaacctcttcttccttgagttcgaattcatcaatctccttatagtatgccttctgtttctcaatgaaat |
178 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32423167 |
gaatattatatcaatcactcatcaacagattcaacctcttcttcctcgagttcgaattcatcaatctccttatagtatgccttctgtttctcaatgaaat |
32423068 |
T |
|
| Q |
179 |
cttgaaactcaacttgttcattaggcacaccacgctgcttctgaaaaaacaaattcaaacaaattatagcaacatatatatccattaaatttggggaaat |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32423067 |
cttgaaactcaacttgttcattaggcacaccacgctgcttctgaaaaaacaaattcaaacaaattatagcaac----atatccattaaatttggggaaat |
32422972 |
T |
|
| Q |
279 |
taagatcatgcgctagtagttattataagaaaa |
311 |
Q |
| |
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|||||||||||| |||| ||||||||||||||| |
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| T |
32422971 |
taagatcatgcggtagttgttattataagaaaa |
32422939 |
T |
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