View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16627_high_11 (Length: 315)
Name: NF16627_high_11
Description: NF16627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16627_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 7 - 296
Target Start/End: Complemental strand, 52512838 - 52512549
Alignment:
| Q |
7 |
gcagcagagaacttcatttgtgacacaatttaataaatcattcctatagtgccacaaacctcgaggttttgaaatgggaggagaaacaatatatgatggt |
106 |
Q |
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| T |
52512838 |
gcagcaaagaacttcatttgtgacacaatttaataaatcattcctatagtgccacaaacctcgaggttttgaaatgggaggagaaacaatatatgatggt |
52512739 |
T |
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| Q |
107 |
gcaggggcaggaacggtaattatgtttcttttatgatgatgtttataatttgagaccgaaggcgtcaaaacaggagaatgtattttggttggaagtggct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52512738 |
gcaggggcaggaacggtaattatgtttcttttatgatgatgtttataatttgagaccgaaggcgtcaaaacaggagaatgtattttggctggaagtggct |
52512639 |
T |
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| Q |
207 |
ttggtgttttgtacaaaggtgcagcaactggcgctccaccctttacgggatggatgattcttgaaggagtggataagggagaggggacag |
296 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512638 |
ttggtgttttgtacaaaggtgcggcaactggcgctccaccctttacgggatggatgattcttgaaggagtggataagggagaggggacag |
52512549 |
T |
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