View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16627_high_13 (Length: 294)
Name: NF16627_high_13
Description: NF16627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16627_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 41289256 - 41289000
Alignment:
| Q |
19 |
ggtagatctagaacacaccaatgttgcataattactggttaggagcagattgaataataaataaacacatccttttgaatcatatttccatttatgtttg |
118 |
Q |
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| T |
41289256 |
ggtagatctagaacacaccaatgttgcataattactagttaggagcagattgaataataaataaacacatccttttgaatcatatttccatttatgtttg |
41289157 |
T |
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| Q |
119 |
tcctaccttcaaaaggcacgtcgaaattataattcgattatacacgtggatccttactttgatggaattaagcctagacatggctccctatgttttgtat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41289156 |
tcctaccttcaaaaggcacgtcgaaattataattcgattatacacgtggatccttactttgatggaattaagcctagacatggctccctatgttttgtat |
41289057 |
T |
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| Q |
219 |
aatgtaacaccttattatataaacaaaatcttatctattcaaatttgagtgtgtttt |
275 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41289056 |
aatgtaacagcttattatataaacaaaatcttatctattcaaatttgagtgtgtttt |
41289000 |
T |
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