View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16627_high_16 (Length: 263)
Name: NF16627_high_16
Description: NF16627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16627_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 21576268 - 21576498
Alignment:
| Q |
13 |
gagatgaaaccatcttcaaagggttggttataagcgattgttggaattaatagaaggtctaatagaaagaagagattcaagagtttcattagtttttgga |
112 |
Q |
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| T |
21576268 |
gagatgaaaccatcttcaaagggttggttagaagcgattgttggaattaatagaaggtgtgatagaaagaagagattcaagagtttcattagtttctgga |
21576367 |
T |
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| Q |
113 |
ttttgtttaagagtatggnnnnnnngaaagtgttgttggagattttggtttgtagaaattggttacgtaggtataaggaattggttggtgttggaatttg |
212 |
Q |
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| T |
21576368 |
ttttgtttaagagtatggtttttttgaaagtgttgttggagattttggtttgtagaaattggttacgtaggtataaggaattggttggtgttggaatttg |
21576467 |
T |
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| Q |
213 |
gattttgtttggtttttctgatatgtgatgtt |
244 |
Q |
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| T |
21576468 |
gattttgtttggttttt-tgatatgtgatgtt |
21576498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 21579996 - 21580092
Alignment:
| Q |
145 |
ttgttggagattttggtttgtagaaattggttacgtaggtataaggaattggttggtgttggaatttggattttgtttggtttttctgatatgtgatgtt |
244 |
Q |
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| T |
21579996 |
ttgttggagatt--ggtttgtggaa-ttggttacgtaggtatgaagaattggttggtgttggaatttagattttgtttggttttttggatacgtgatgtt |
21580092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 21579885 - 21579981
Alignment:
| Q |
13 |
gagatgaaaccatcttcaaagggttggttataagcgattgttggaattaatagaaggtctaatagaaagaagagattcaagagtttcattagttttt |
109 |
Q |
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| T |
21579885 |
gagatgaaaccatctttaaagggttgaacatagccactagttggaattaatataaggtgtaatagaaagaatagattcaagagtgtcattagttttt |
21579981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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