View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16627_high_4 (Length: 473)
Name: NF16627_high_4
Description: NF16627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16627_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 165 - 457
Target Start/End: Original strand, 42015125 - 42015417
Alignment:
| Q |
165 |
ttgaaaattatgattagtgacggttaatcagttgtgacactttgttatatttattagcaatctactgaatcaaatcaacaacatattttaaatgtgttaa |
264 |
Q |
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| T |
42015125 |
ttgaaaattatgattagtgacggttaaacagttgtgacactttgttatatttattagcaatctactgaatcaaatcaacaacatattttaaatgtgttaa |
42015224 |
T |
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| Q |
265 |
ccatataatctattgtcgaaatttgatgccaaacttgtgtaaaaataacaaaactcatactaagattagttacctctacaaagtttctatatatagctgg |
364 |
Q |
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| T |
42015225 |
ccatataatctattgtcgaaatttgatgtcaaacttgtgtaaaaataacacaactcatactaagattaattacctctacaaagtttctatatatagctgg |
42015324 |
T |
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| Q |
365 |
atataactggtgtacatgaggatgatcttcatcaagatgaagcacatttgcaattatctccaatccaaaatgctgcatgattaacgaatattg |
457 |
Q |
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| T |
42015325 |
atataactggtgtacatgaggatgatcttcatcaagatgaagcacatttgcaattatctccaatccaaaatgctgcatgattaacgaatattg |
42015417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 42014991 - 42015126
Alignment:
| Q |
1 |
cgtgatcgtgtctcactaaaccacgattttgaacgaaaataaccacgattttcaggtgtatatttaaacacaaaatgtagttaacgaattttcatgcata |
100 |
Q |
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| T |
42014991 |
cgtgatcgtatctcactaaaccacgattttgaacgaaaataaccacgattttcaggtgtatatttaaacacaaaatgtagttaacgaattttcatgcata |
42015090 |
T |
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| Q |
101 |
ttttaacacttaaatcgcgtatatttgatcgtaatt |
136 |
Q |
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| T |
42015091 |
ttttaacacttaaatcgcgtatatttgatcgtaatt |
42015126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 51541511 - 51541566
Alignment:
| Q |
26 |
attttgaacgaaaataaccacgattttcaggtgtatatttaaacacaaaatgtagt |
81 |
Q |
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| T |
51541511 |
attttgaacgatattaacaacgattttcaagtgtatatttaaactcaaattgtagt |
51541566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 1327827 - 1327793
Alignment:
| Q |
40 |
taaccacgattttcaggtgtatatttaaacacaaa |
74 |
Q |
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| T |
1327827 |
taaccacgattttcaagtgtatatttaaacacaaa |
1327793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 11497559 - 11497624
Alignment:
| Q |
19 |
aaccacgattttgaacgaaaataaccacgattttcaggtgtatatttaaacacaaaatgtagttaa |
84 |
Q |
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| T |
11497559 |
aaccatgattttgaacatcattaaccacgattttcaggtgtaaatttgaacacaaactgtggttaa |
11497624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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