View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16627_high_7 (Length: 423)
Name: NF16627_high_7
Description: NF16627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16627_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 4270099 - 4270499
Alignment:
| Q |
18 |
ttttgtggcagctagcactggacttggtgctatcattttgtgtttgttaagcttctggattttttacatcaagtattcttcaaaatccaaaaagaaaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4270099 |
ttttgtggcagctagcactggacttggtgctatcattttgtgtttgttaagcttctggattttttacatcaagtattcttcaaaatccaaaaagaaaaac |
4270198 |
T |
|
| Q |
118 |
cttcaaaactcaggtattttgtgttaaatatggttatagtccctataattatctcgaattttgttttagttcttgtatcgcctttttagtcctcgcaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4270199 |
cttcaaaactcaggtattttgtgttaaatatggttatagtccctataattatctcgaattttgttttagttcttgtatcgcctttttagtcctcgcaaat |
4270298 |
T |
|
| Q |
218 |
tgcaaaaattatgtctatagttgtgatttttggggaataaaaagtggttacatagaatgaaaacaagaaaatgtaaattttgtgttgattaagagttgtc |
317 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4270299 |
tgcaaaaattgtgtctatagttgtgatttttggggactaaaaagtggttacatagattgaaaacaagaaaatgtaaattttgtgttgattaagagttgtc |
4270398 |
T |
|
| Q |
318 |
tgaaaatttgttgcnnnnnnnnccctgttctgtttgttgtatgtctagatggtgaaaaagggcttcgtttagtaccattttagagtaaattcagttctgt |
417 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
4270399 |
tgaaaatttgttgcttttttttccctgttctgttttttgtatgtctagatggtgaaaaagggcttcgtttagttccatttttgagtaaattcagttctgt |
4270498 |
T |
|
| Q |
418 |
g |
418 |
Q |
| |
|
| |
|
|
| T |
4270499 |
g |
4270499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 2806444 - 2806843
Alignment:
| Q |
18 |
ttttgtggcagctagcactggacttggtgctatcattttgtgtttgttaagcttctggattttttacatcaagtattcttcaaaatccaaaaagaaaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2806444 |
ttttgtggcagctagcactggacttggtgctatcattttgtgtttgttaagcttctggattttttacatcaagtattcttcaaaatccaaaaagaaaaac |
2806543 |
T |
|
| Q |
118 |
cttcaaaactcaggtattttgtgttaaatatggttatagtccctataattatctcgaattttgttttagttcttgtatcgcctttttagtcctcgcaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2806544 |
cttcaaaactcaggtattttgtgttaaatatggttatagtccctataattatctcgaattttgttttagttcttgtatcgcctttttagtcctcacaaat |
2806643 |
T |
|
| Q |
218 |
tgcaaaaattatgtctatagttgtgatttttggggaataaaaagtggttacatagaatgaaaacaagaaaatgtaaattttgtgttgattaagagttgtc |
317 |
Q |
| |
|
||| |||||| |||||||||||||||||||| |||| |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2806644 |
tgc-aaaattgtgtctatagttgtgatttttagggactaaaaattagttacatagattgaaaacaagaaaatgtaaattttgtgttgattaagagttgtc |
2806742 |
T |
|
| Q |
318 |
tgaaaatttgttgcnnnnnnnnccctgttctgtttgttgtatgtctagatggtgaaaaagggcttcgtttagtaccattttagagtaaattcagttctgt |
417 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| |
|
|
| T |
2806743 |
tgaaaatttgttgcttttttttccctgttctgttttttgtacgtctagatggtgaaaaagggcttggtttagttccatttttgagtaaattcagttctgt |
2806842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University