View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16627_low_10 (Length: 415)
Name: NF16627_low_10
Description: NF16627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16627_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Original strand, 37147499 - 37147885
Alignment:
| Q |
17 |
agttagcatagcttataaatacttgatgtacaaagctagttacaactaatgataatcattttttcttcattccttttctactcataatgtttctgacttt |
116 |
Q |
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| T |
37147499 |
agttagcatagcttataaatacttgatgtacaaagctagttacaactaatgataatcattttttcttcattccttttctactcataatgtttctgacttt |
37147598 |
T |
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| Q |
117 |
ctgcaannnnnnnatctgagaggtatttatttaaagataatccttttgttttgaatatgattttgtgtagcaaaaggtatgaaattgaagaggataaatt |
216 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37147599 |
ctgcaatttttttatctgagaggtatttatttagagataatccttttgttttgaatatgattttgtgtagctaaaggtatgaaattgaagaggataaatt |
37147698 |
T |
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| Q |
217 |
acaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaatcaatgttgaactcttaattaagagaaatcaatagcgattatca |
316 |
Q |
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| T |
37147699 |
acaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaatcaatgttgaactcttaattaagagaaattaatagcgattatca |
37147798 |
T |
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| Q |
317 |
atccattacgaaaaccatagcctgaagctctgtattctctaatgttcgggtctggctattacttttttggttacatgttcaggtctg |
403 |
Q |
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| T |
37147799 |
atccattacgaaaaccatagcctgaagctctgtattctctaatgttcgggtctggctattatttttatagttacatgttcaggtctg |
37147885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 199 - 330
Target Start/End: Complemental strand, 7894562 - 7894431
Alignment:
| Q |
199 |
aattgaagaggataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaatcaatgttgaactcttaattaagaga |
298 |
Q |
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| T |
7894562 |
aattgaagaggataaattacaataaatgtttgttggatgaaattgaaaacgaaattgtgaattaattaattaaatcaaagttgaactcttaattaaggga |
7894463 |
T |
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| Q |
299 |
aatcaatagcgattatcaatccattacgaaaa |
330 |
Q |
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| T |
7894462 |
aatcaatagcgattatcagtcgaatacgaaaa |
7894431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 35718220 - 35718141
Alignment:
| Q |
192 |
ggtatgaaattgaagaggataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaa |
271 |
Q |
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| T |
35718220 |
ggtatgaaattgaagaggacaaattacaaagaatgtttgttggacaaagttgaaaacgacattgtaaattaattaattaa |
35718141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 35411082 - 35411163
Alignment:
| Q |
192 |
ggtatgaaattgaagaggataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaat |
273 |
Q |
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| T |
35411082 |
ggtataaaattaaagaggataaatttcaatgaatgtttgttggacgaaattcaaaacgaaattgtgaattaattaattaaat |
35411163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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