View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16627_low_16 (Length: 312)
Name: NF16627_low_16
Description: NF16627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16627_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 45230544 - 45230801
Alignment:
| Q |
16 |
aattctccttcattcaatgcgacaaatacagaaactcaatctttctggtatgcaaatcatggtacaagattgaacggtggtgcaggaagaagacgctatg |
115 |
Q |
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| T |
45230544 |
aattctccttcattcaatgcgacaaataccgaaactcaatctttctggtatgcaaatcatggtacaagattgaacggtggtgcaggaagaagacgctatg |
45230643 |
T |
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| Q |
116 |
aatccaatgacagtgattaaacggtttccagagctgagatccattgcgttgaaaggtaaactgcactttggttacatttgtccttggatcgaagctatgg |
215 |
Q |
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| T |
45230644 |
aatccagcgactgtgattaaacggtttccagagctgagatccattgcgttgaaaggtaaaccgcactttggttacgtttgtccttggatcgaagctatgg |
45230743 |
T |
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| Q |
216 |
ctgttcttgtttgtgttggtggtgaagatgaagatcttcacccgctcctgttatttcc |
273 |
Q |
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| T |
45230744 |
ctgttcttatttgtgttggtggtgaagatgaagatcttcacccgctcctgttatttcc |
45230801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 47488317 - 47488574
Alignment:
| Q |
16 |
aattctccttcattcaatgcgacaaatacagaaactcaatctttctggtatgcaaatcatggtacaagattgaacggtggtgcaggaagaagacgctatg |
115 |
Q |
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| T |
47488317 |
aattctccttcattcaatgcgacaaataccaaaactcaatcttcctggtatgcaaatcatggtacaagattgaacggtggtgcaggaagaagacgctatg |
47488416 |
T |
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| Q |
116 |
aatccaatgacagtgattaaacggtttccagagctgagatccattgcgttgaaaggtaaactgcactttggttacatttgtccttggatcgaagctatgg |
215 |
Q |
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| T |
47488417 |
aatccagcgacggtgattaaacggtttccagagctgagatccattgcgttgaaaggtaaactgcactttcgttacgtttgtccttggatcgaagctatgg |
47488516 |
T |
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| Q |
216 |
ctgttcttgtttgtgttggtggtgaagatgaagatcttcacccgctcctgttatttcc |
273 |
Q |
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| T |
47488517 |
ctattcttgtttgtattggtggtgaagatgaagatcttcacccgttcctgttatttcc |
47488574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 9309170 - 9309251
Alignment:
| Q |
192 |
tttgtccttggatcgaagctatggctgttcttgtttgtgttggtggtgaagatgaagatcttcacccgctcctgttatttcc |
273 |
Q |
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| T |
9309170 |
tttgtccttggatcgaagccatggctgttgttgtttgtgttggtggtgaagattaagatcttctcctgctcctgctatttcc |
9309251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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