View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16627_low_17 (Length: 305)
Name: NF16627_low_17
Description: NF16627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16627_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 26519900 - 26520179
Alignment:
| Q |
19 |
aggtgaggaatcaacattaactgtgagagaatcagccatgtttataggttgaatgccaaacctatgctgaaagtataactcaagtttcgtattcttatat |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26519900 |
aggtgaggaatcaacattaactgtgagtgaatcagccatgtt-ataggttgaatgccaaacctgtgctgaaagtataactcaagtttcgtattcttatat |
26519998 |
T |
|
| Q |
119 |
ggagaaagctgggtctgttgtagttaataaatatactattttgatagtgaaataaaatgtcaattgaattataagaaagaaagtgttacatattaaaatc |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26519999 |
ggagaaagctgggtctgttgaagttaataaatatactattttgatagtgaaataaaatgtcaattgaattataagaaagaaagtgttacatattaaaatc |
26520098 |
T |
|
| Q |
219 |
ctaatcttgataatttagttttgacttttgtggacttacctacatcccttaaa----agttatgtagcacgaacacttcat |
295 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26520099 |
cttatcttgataatttagttttgacttttatggacttatctacatcccttaaaagttagttatgtagcacgaacacttcat |
26520179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University