View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16627_low_19 (Length: 288)
Name: NF16627_low_19
Description: NF16627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16627_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 35 - 278
Target Start/End: Original strand, 10156961 - 10157204
Alignment:
| Q |
35 |
gttaacccaaatagcaataatgcttgaagatttcaccagcttagtggttcaagattagttcattagtggtgtaaattttgtttcacaaacacatttcgtc |
134 |
Q |
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| T |
10156961 |
gttaacccaaatagcaataatgcttgaagatttcaccagcttagtggttcaagattagttcattagtggtgtaaattttgtttcacaaacacatttcgtc |
10157060 |
T |
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| Q |
135 |
caaatcctttaatttgatccacataggtttgattcaaagttaaaagatcagttggatgtca-tttcacagtataataccactaannnnnnnnnnnnnnnn |
233 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
10157061 |
caaatcctt-aatttgatccacataggtttgattcaaagttaaaagatcagttggatgtgactttcacagtataataccactaattttaaatttttattt |
10157159 |
T |
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| Q |
234 |
nnnatcatttctcctaaattttcttatacactcattctccctttg |
278 |
Q |
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| T |
10157160 |
tttatcatttctcctaaattttcttatacactcattctctctttg |
10157204 |
T |
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