View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16627_low_2 (Length: 781)
Name: NF16627_low_2
Description: NF16627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16627_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 584; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 13 - 691
Target Start/End: Complemental strand, 10627681 - 10627011
Alignment:
| Q |
13 |
cagagagaaagagagagtacttttgagttagggttttccatgattgaagcaattgacgagcagaatcaacttcttgttgtgtaggcaactgaggagcgag |
112 |
Q |
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| T |
10627681 |
cagagagaaagagagagtacttttgagttagggttttccatgattgaagcaattgacgagcagaatcaacttcttgttgtgtaggcaactgaggagcgag |
10627582 |
T |
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| Q |
113 |
aagatcgagattgaaatgcaaagaagaaagaagcgctaaaccatcttgagcaataccgtttaatctagcaagtgaattcttttcatcttttgatcttcct |
212 |
Q |
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| T |
10627581 |
aagatcgagattgaaatgcaaagaagaaagaagcgctaaaccatcttgagcaataccgtttaatctagcaagtgaattcttttcatcttttgatcttcct |
10627482 |
T |
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| Q |
213 |
gatttaccgtattctccaattgcattgatgtgatcctgtgttttgatgcatgtttcgttccactctttcttcaccttttcctcctcttctacaatcttgt |
312 |
Q |
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| T |
10627481 |
gatttaccgtattctccaattgcattgatgtgatcctgtgttttgatgcatgtttcgttccactctttcttcaccctttccacctcttctacaaccttgt |
10627382 |
T |
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| Q |
313 |
ccattttctcacaatagaaataaagcgagagagatcgaaattgatgatgagggagaacgaaggaagaatgagtgaatcagaatctgatattgtgtgaaat |
412 |
Q |
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| T |
10627381 |
cca-tttctcacaatagaaagaaagcgagagagatcgaaattgatgatgagggagaacgaaggaagaatgagtgaatcagaatctgatattgtgtgaaat |
10627283 |
T |
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| Q |
413 |
tgttttccttgtacatgtatagagattgtcgatccgatggatgaacagggaaatgtgagagtgtaacaaaacgcccaaatagttaacgctgtgtttgttt |
512 |
Q |
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| T |
10627282 |
tgttttccttgtacaggtatagagattgtcgatccgatggatgaacagggaaatgtgagagtgtaacaaaacgcccaaata---------gtgtttgttt |
10627192 |
T |
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| Q |
513 |
tgagaaataaaatgaggaaggaaagtaaagacggatttt-catccagcagttttcttgcgggtcatgacaaaaagcagggttgacataacgggtcaacca |
611 |
Q |
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| T |
10627191 |
tgagaaataaaatgaggaaggaaagtaaagacggattttccatccagcagttttcttgcgggtcatgacaaaaagcagggttgacataacgggtcaacca |
10627092 |
T |
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| Q |
612 |
cccggaccgacccactccatcaatg-nnnnnnncttaaaatattactcaaaaacttcacaaaaacaatgtaaaaatgtata |
691 |
Q |
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| T |
10627091 |
cccggaccgacccactccatcaatgttttttttcttaaaatattactcaaaaacttcacaaaaacaatgtaaaaatgtata |
10627011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 719 - 767
Target Start/End: Complemental strand, 10626829 - 10626781
Alignment:
| Q |
719 |
atggttgaaactaagtgaacattcagagtagcagatcacatacatatat |
767 |
Q |
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| T |
10626829 |
atggttgaaactaagtgaacattcagagtagtagatgacatacatatat |
10626781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 685
Target Start/End: Original strand, 10317358 - 10317395
Alignment:
| Q |
648 |
aaatattactcaaaaacttcacaaaaacaatgtaaaaa |
685 |
Q |
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| T |
10317358 |
aaatattaatcataaacttcacaaaaacaatgtaaaaa |
10317395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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