View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16627_low_25 (Length: 233)
Name: NF16627_low_25
Description: NF16627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16627_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 45313252 - 45313044
Alignment:
| Q |
1 |
tatgatgattgaacaacgcaaggtcgcaattcttaccaaatatgctaaaaatcccctccttgttttgacttatgatatccgttcctctttcatttgaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45313252 |
tatgatgattgaacaacgcaaggtcgcaattcttaccaaatatgctaaaaatcccctccttgttttgacttatgatatccgttcctctttcatttgaaag |
45313153 |
T |
|
| Q |
101 |
caaataatgatttaaaccatgcatcaaacagaactgatacccttcaaatcattgattcaattttataagaaaatcaaatttcagaaaagatgacataagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45313152 |
caaataatgatttaaaccatgcatcaaacagaactgatacccttcaaatcattgattcaattttataagaaaatcagatttcagaaaagatgacataagg |
45313053 |
T |
|
| Q |
201 |
atgagaaag |
209 |
Q |
| |
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||||||||| |
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| T |
45313052 |
atgagaaag |
45313044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 27758938 - 27758732
Alignment:
| Q |
1 |
tatgatgattgaacaacgcaaggtcgcaattcttaccaaatatgctaaaaatcccctccttgttttgacttatgatatccgttcctctttcatttgaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
27758938 |
tatgatgattgaacaacgcaaggtcgcaattcttaccaaatatgctaaaaatcccctccttgttttgacttatgatatctgttcctctttcgtttgaaag |
27758839 |
T |
|
| Q |
101 |
caaataatgatttaaaccatgcatcaaacagaactgatacccttcaaatcattgattcaattttataagaaaatcaaatttcagaaaagatgacataagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
27758838 |
caaataatgatttaaaccatgcatcaaacagaactggtacccttcaaatcatagattcaattttataagaaaatcagatttcagaaaagatgac--aagg |
27758741 |
T |
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| Q |
201 |
atgagaaag |
209 |
Q |
| |
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||||||||| |
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| T |
27758740 |
atgagaaag |
27758732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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