View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16627_low_26 (Length: 231)
Name: NF16627_low_26
Description: NF16627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16627_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 48543705 - 48543490
Alignment:
| Q |
1 |
agccaatattaccatggagccacgcataaattgtccatcgaagtctctaattaagccactgaatcctgccatccccgggttggtttgagcactaccatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48543705 |
agccaatattaccatggagccacgcataaattgtccatcgaagtctctaattaagccactgaatcctgtcatccccgggttggtttgagcactaccatcc |
48543606 |
T |
|
| Q |
101 |
acattaagaatatatgagtcatgatggcctttttgctaagaaataaattgaggctgaatgcgagtaatctccttatgcatactgctgaaagcttgagtaa |
200 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48543605 |
acattaagaatatatgagtcaggatggcttttttgctaagaaataaattgaggctgaatgcgagtaatctccttatgcatactgctgaaagcttgagtaa |
48543506 |
T |
|
| Q |
201 |
cataacgagtcataac |
216 |
Q |
| |
|
||| | |||||||||| |
|
|
| T |
48543505 |
catcatgagtcataac |
48543490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 52666381 - 52666579
Alignment:
| Q |
1 |
agccaatattaccatgga-gccacgcataaattgtccatcgaagtctctaattaagccactgaatcctgccatccccgggttggtttgagcactaccatc |
99 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
52666381 |
agccaatattaccatgaaagccacacataaattgtccatcgaagtctctaattaagccaccaaatcctctcatccccgggttggtttgagaactatcatc |
52666480 |
T |
|
| Q |
100 |
cacattaagaatatatgagtcatgatggcctttttgctaagaaataaattgaggctgaatgcgagtaatctccttatgcatactgctgaaagcttgagt |
198 |
Q |
| |
|
||||| |||||||||||||||| |||| ||| ||||| || |||||| |||||||||||||| |||| ||||||||||||||| || ||||||||||| |
|
|
| T |
52666481 |
cacataaagaatatatgagtcaggatgacctctttgccaaaaaataagttgaggctgaatgctagtactctccttatgcatacctctaaaagcttgagt |
52666579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 8194900 - 8195087
Alignment:
| Q |
29 |
aattgtccatcgaagtctctaattaagccactgaatcctgccatccccgggttggtttgagcactaccatccacattaagaatatatgagtcatgatggc |
128 |
Q |
| |
|
||||||||||| ||| |||||||||||||| |||| ||||||||| | || |||| |||||||||||||||||||||| |||||| || ||| | |
|
|
| T |
8194900 |
aattgtccatcagagtttctaattaagccaccaaatcttgccatccctgaatttgtttaagcactaccatccacattaagagtatatgctccagaatgac |
8194999 |
T |
|
| Q |
129 |
ctttttgctaagaaataaattgaggctgaatgcgagtaatctccttatgcatactgctgaaagcttgagtaacataacgagtcataac |
216 |
Q |
| |
|
|||| ||| ||||||||| |||||||||||| | |||||||||||||||||||| | ||||| ||||||||||| |||||||||||| |
|
|
| T |
8195000 |
ctttatgccaagaaataagttgaggctgaatactagtaatctccttatgcatacagttgaaaatttgagtaacatcacgagtcataac |
8195087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 34445084 - 34444952
Alignment:
| Q |
83 |
gtttgagcactaccatccacattaagaatatatgagtcatgatggcctttttgctaagaaataaattgaggctgaatgcgagtaatctccttatgcatac |
182 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||| ||| ||| | | | |||||||||| ||||| ||||| | |||||||||| ||||||||| |
|
|
| T |
34445084 |
gtttgagcactaccatccacattaaaaatatatgagccataatgacctctattccaagaaataaactgaggttgaataccagtaatctccatatgcatac |
34444985 |
T |
|
| Q |
183 |
tgctgaaagcttgagtaacataacgagtcataa |
215 |
Q |
| |
|
| ||||||||||| |||||| ||||||||||| |
|
|
| T |
34444984 |
tcttgaaagcttgaataacatcacgagtcataa |
34444952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 19246113 - 19246022
Alignment:
| Q |
23 |
cgcataaattgtccatcgaagtctctaattaagccactgaatcctgccatccccgggttggtttgagcactaccatccacattaagaatata |
114 |
Q |
| |
|
||||| |||| ||||| |||||||||||||||||||| || |||||||| | |||| ||||||||| | ||||||| ||||||||||| |
|
|
| T |
19246113 |
cgcatgaattctccattgaagtctctaattaagccaccaaaatctgccatctctaggttagtttgagcattgtcatccacgttaagaatata |
19246022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 14624422 - 14624571
Alignment:
| Q |
35 |
ccatcgaagtctctaattaagccactgaatcctgccatccccgggttggtttgagcactaccatccacattaagaatatatgagtcatgatggccttttt |
134 |
Q |
| |
|
||||| |||||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||| || ||||| ||| |
|
|
| T |
14624422 |
ccatcaaagtctctaactaagccaccagatcctgccatctccaggttggtttgagcactaccatccacattaaaaatatatgaatc----gggcctcttt |
14624517 |
T |
|
| Q |
135 |
gctaagaaataaattgaggctgaatgcgagtaatctccttatgcatactgctga |
188 |
Q |
| |
|
||||||||| |||||| ||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
14624518 |
atcaagaaataagttgaggttgaatgctagtaatctccttatgcacactcctga |
14624571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University