View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16627_low_27 (Length: 229)

Name: NF16627_low_27
Description: NF16627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16627_low_27
NF16627_low_27
[»] chr1 (14 HSPs)
chr1 (31-213)||(13204739-13204921)
chr1 (45-213)||(13101280-13101448)
chr1 (34-213)||(19727433-19727612)
chr1 (45-213)||(13007480-13007648)
chr1 (45-213)||(13069920-13070088)
chr1 (38-182)||(30367845-30367989)
chr1 (45-208)||(13214104-13214267)
chr1 (98-204)||(13244315-13244421)
chr1 (68-204)||(13271878-13272014)
chr1 (82-182)||(12963689-12963789)
chr1 (82-187)||(13086416-13086521)
chr1 (39-187)||(13064951-13065099)
chr1 (131-210)||(13161804-13161883)
chr1 (125-182)||(13130139-13130196)
[»] chr6 (1 HSPs)
chr6 (46-187)||(31396420-31396562)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 31 - 213
Target Start/End: Complemental strand, 13204921 - 13204739
Alignment:
Q  31 gaagaaatgagtgggaagtttcttagagacgatacactcactctcttgttagcaggaagtggtccagttagttcaggtctaagttggnnnnnnnggcttg 130  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||       ||||||    
T  13204921 gaagaaatgagtgggaagtttcttagagacgatacactctctctcttcttagcaggaagtggtccagctagttcaggtctaagttggtttttttggcttg 13204822  T
Q  131 tttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagaggagaatcagattcct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13204821 tttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagaggagaatcagattcct 13204739  T

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Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 45 - 213
Target Start/End: Complemental strand, 13101448 - 13101280
Alignment:
Q  45 gaagtttcttagagacgatacactcactctcttgttagcaggaagtggtccagttagttcaggtctaagttggnnnnnnnggcttgtttccactcatcct 144  Q
    ||||| |||||||||| ||  | |||||||||| |||||||||| ||| ||||||||||||| ||| ||||||       ||||||||||||||||||||    
T  13101448 gaagtatcttagagacaatgtaatcactctctttttagcaggaaatggcccagttagttcagctctcagttggtttttctggcttgtttccactcatcct 13101349  T
Q  145 attgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagaggagaatcagattcct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13101348 attgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagaggagaatcagattcct 13101280  T

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Target: chr1; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 34 - 213
Target Start/End: Complemental strand, 19727612 - 19727433
Alignment:
Q  34 gaaatgagtgggaagtttcttagagacgatacactcactctcttgttagcaggaagtggtccagttagttcaggtctaagttggnnnnnnnggcttgttt 133  Q
    ||||||| || ||||| |||||||||| ||  |||||||||||| |||||||||| ||| ||||||||| ||||||| ||||||       |||||||||    
T  19727612 gaaatgaatgagaagtatcttagagacaatttactcactctctttttagcaggaaatggcccagttagtacaggtctcagttggtttttttggcttgttt 19727513  T
Q  134 ccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagaggagaatcagattcct 213  Q
    | |||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||| ||||    
T  19727512 cgactcatcctattgtcgaagccaaaattattcaagaaatcaaagataactggcccacacaagaggagaaccagactcct 19727433  T

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Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 45 - 213
Target Start/End: Complemental strand, 13007648 - 13007480
Alignment:
Q  45 gaagtttcttagagacgatacactcactctcttgttagcaggaagtggtccagttagttcaggtctaagttggnnnnnnnggcttgtttccactcatcct 144  Q
    ||||| |||||||||| ||   ||||||||||| |||||||||| |||  || ||||||||||||| ||||||       |||||||||| |||||||||    
T  13007648 gaagtatcttagagacaatgtcctcactctctttttagcaggaaatggcacaattagttcaggtctcagttggtttttctggcttgtttcaactcatcct 13007549  T
Q  145 attgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagaggagaatcagattcct 213  Q
    ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| ||||    
T  13007548 attgtggaagccaaaattattcaagaaatcaaagataactggcccacacaagaggagaatcagactcct 13007480  T

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Target: chr1; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 45 - 213
Target Start/End: Original strand, 13069920 - 13070088
Alignment:
Q  45 gaagtttcttagagacgatacactcactctcttgttagcaggaagtggtccagttagttcaggtctaagttggnnnnnnnggcttgtttccactcatcct 144  Q
    ||||| |||||||||| || ||||| ||||||| |||||||||| |||  |||||| ||||||||| ||||||       |||||||||| |||||||||    
T  13069920 gaagtatcttagagacaatgcactctctctctttttagcaggaaatggcacagttacttcaggtctcagttggtttttctggcttgtttcaactcatcct 13070019  T
Q  145 attgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagaggagaatcagattcct 213  Q
    ||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||| ||||    
T  13070020 attgtggaagccaaaattattcaagaaataaaagataactggcccacacaagaggagaatcagactcct 13070088  T

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Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 30367845 - 30367989
Alignment:
Q  38 tgagtgggaagtttcttagagacgatacactcactctcttgttagcaggaagtggtccagttagttcaggtctaagttggnnnnnnnggcttgtttccac 137  Q
    |||||| ||||| |||||||||| || ||||| |||| ||||||||||| | |||  || |||||||| |||| ||||||       |||||||||| ||    
T  30367845 tgagtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacacttagttcaagtctcagttggtttttctggcttgtttcaac 30367944  T
Q  138 tcatcctattgtggaagccaaaataattcaagaaatcaaagataa 182  Q
    |||||||||||||||||||||||| |||||||| |||||||||||    
T  30367945 tcatcctattgtggaagccaaaattattcaagagatcaaagataa 30367989  T

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Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 208
Target Start/End: Complemental strand, 13214267 - 13214104
Alignment:
Q  45 gaagtttcttagagacgatacactcactctcttgttagcaggaagtggtccagttagttcaggtctaagttggnnnnnnnggcttgtttccactcatcct 144  Q
    ||||| |||||||||| || |  |||||||||| |||||||||| ||| |||||| |||||||||| | ||||       |||||||||| ||||||| |    
T  13214267 gaagtatcttagagacaatgcgatcactctctttttagcaggaaatggcccagttcgttcaggtctcatttggtttttctggcttgtttcaactcatctt 13214168  T
Q  145 attgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagaggagaatcaga 208  Q
    ||||||||||| ||||| ||||||||||| |||||| |||  || ||| |||||||||||||||    
T  13214167 attgtggaagctaaaattattcaagaaataaaagattacttgcccacagaagaggagaatcaga 13214104  T

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Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 204
Target Start/End: Original strand, 13244315 - 13244421
Alignment:
Q  98 ttagttcaggtctaagttggnnnnnnnggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaaga 197  Q
    ||||||||||||||||||||       |||||||||| ||||||||||||| |||||| ||||| |||||||| ||||||||||| ||||  ||||||||    
T  13244315 ttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattggggaagcgaaaattattcaagagatcaaagataattgtctaacacaaga 13244414  T
Q  198 ggagaat 204  Q
    |||||||    
T  13244415 ggagaat 13244421  T

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Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 13272014 - 13271878
Alignment:
Q  68 tcactctcttgttagcaggaagtggtccagttagttcaggtctaagttggnnnnnnnggcttgtttccactcatcctattgtggaagccaaaataattca 167  Q
    |||||||||||   ||||||| |||  |||||||||||||||||||||||       |||||||||| |||||||||| ||||||||| ||| | |||||    
T  13272014 tcactctcttggctgcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctaatgtggaagcaaaacttattca 13271915  T
Q  168 agaaatcaaagataactgtcctacacaagaggagaat 204  Q
    ||| ||||||||| | ||||  |||||||||||||||    
T  13271914 agagatcaaagatcattgtctaacacaagaggagaat 13271878  T

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Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 12963689 - 12963789
Alignment:
Q  82 gcaggaagtggtccagttagttcaggtctaagttggnnnnnnnggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagata 181  Q
    |||||||||||  |||||||||||||||||||||||       |||||||||| |||||||||||||||||| | ||||| |||||||| || |||||||    
T  12963689 gcaggaagtggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaaactaaaattattcaagagattaaagata 12963788  T
Q  182 a 182  Q
    |    
T  12963789 a 12963789  T

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Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 187
Target Start/End: Complemental strand, 13086521 - 13086416
Alignment:
Q  82 gcaggaagtggtccagttagttcaggtctaagttggnnnnnnnggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagata 181  Q
    |||||||||||  |||||||||||||||||||||||       |||||||||| ||||||   || |||||||| |||||||||||||| || |||||||    
T  13086521 gcaggaagtggaacagttagttcaggtctaagttggttctcttggcttgtttcaactcatttcatagtggaagctaaaataattcaagagataaaagata 13086422  T
Q  182 actgtc 187  Q
    | ||||    
T  13086421 attgtc 13086416  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 187
Target Start/End: Original strand, 13064951 - 13065099
Alignment:
Q  39 gagtgggaagtttcttagagacgatacactcactctcttgttagcaggaagtggtccagttagttcaggtctaagttggnnnnnnnggcttgtttccact 138  Q
    ||||| ||||| ||||||||||  | || ||| ||| |||||||| ||||  ||  |||||||||||||||| ||||||       ||||||||||   |    
T  13064951 gagtgagaagtatcttagagacactgcagtcaatctattgttagcgggaaacggcacagttagttcaggtctcagttggttcttttggcttgtttcatgt 13065050  T
Q  139 catcctattgtggaagccaaaataattcaagaaatcaaagataactgtc 187  Q
    |||||| ||||||||||||| || |||||||| || |||||||| ||||    
T  13065051 catcctgttgtggaagccaagattattcaagagatgaaagataattgtc 13065099  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 13161883 - 13161804
Alignment:
Q  131 tttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagaggagaatcagatt 210  Q
    |||| ||| |||||||||||||||  ||||| |||||||| ||||||||||| || |  ||||||||||| |||| ||||    
T  13161883 tttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggctaacacaagaggataatcggatt 13161804  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 13130196 - 13130139
Alignment:
Q  125 ggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataa 182  Q
    ||||| |||| ||| |||||||||||||||  ||||| |||||||| |||||||||||    
T  13130196 ggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataa 13130139  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 31396420 - 31396562
Alignment:
Q  46 aagtttcttagagacgatacactcactctcttgttagcaggaagtggtccagttagttcaggtctaagttggnnnnnnnggcttg-tttccactcatcct 144  Q
    |||| |||||||||| ||   ||| |||| ||||||||||||| |||  || |||||||| ||||  |||||       |||||| |||| |||||||||    
T  31396420 aagtatcttagagacaatgtgctctctcttttgttagcaggaaatggcacaattagttcaagtctcggttggtttttctggcttgttttcaactcatcct 31396519  T
Q  145 attgtggaagccaaaataattcaagaaatcaaagataactgtc 187  Q
    | ||||||||||||||| |||||||| ||  ||||||||||||    
T  31396520 aatgtggaagccaaaattattcaagagattcaagataactgtc 31396562  T

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