View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16627_low_4 (Length: 579)

Name: NF16627_low_4
Description: NF16627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16627_low_4
NF16627_low_4
[»] chr7 (19 HSPs)
chr7 (1-360)||(22831824-22832182)
chr7 (356-568)||(22835144-22835356)
chr7 (119-226)||(22816243-22816350)
chr7 (354-568)||(22886610-22886824)
chr7 (128-222)||(22886423-22886524)
chr7 (1-90)||(22810454-22810543)
chr7 (120-226)||(22810585-22810690)
chr7 (35-97)||(22894792-22894854)
chr7 (42-97)||(22841490-22841545)
chr7 (119-174)||(22843080-22843135)
chr7 (1-91)||(22806109-22806199)
chr7 (130-210)||(22843134-22843214)
chr7 (33-87)||(22843005-22843059)
chr7 (1-100)||(22859161-22859261)
chr7 (35-100)||(22816032-22816095)
chr7 (119-176)||(22874013-22874070)
chr7 (33-98)||(22886331-22886396)
chr7 (37-97)||(22899055-22899113)
chr7 (37-97)||(22840890-22840950)
[»] chr1 (3 HSPs)
chr1 (5-96)||(21149819-21149910)
chr1 (381-513)||(35877111-35877242)
chr1 (349-418)||(897241-897310)
[»] chr5 (1 HSPs)
chr5 (275-512)||(4523922-4524154)
[»] chr4 (1 HSPs)
chr4 (340-421)||(52934488-52934570)
[»] scaffold0533 (1 HSPs)
scaffold0533 (355-445)||(3152-3242)
[»] chr8 (1 HSPs)
chr8 (281-323)||(42447348-42447390)
[»] chr3 (1 HSPs)
chr3 (463-513)||(29675556-29675606)
[»] chr2 (1 HSPs)
chr2 (463-508)||(35984842-35984887)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-166; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 22831824 - 22832182
Alignment:
Q  1 tgtagtagtgggggaatatttttcaacgtattcatattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattcttaaa 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22831824 tgtagttgtgggggaatatttttcaacgtattcatattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattcttaaa 22831923  T
Q  101 -gtgnnnnnnnnnnnnccttttcaaacttgaatgtgtggacttgacaagttactattgattatgctgcaaatcaaatgatgaatgaatatgtggtggaag 199  Q
     |||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22831924 agtgttttttttttt--cttttcaaacttgaatgtgtggacttgacaagttactattgattatgctgcaaatcaaatgatgaatgaatatgtggtggaag 22832021  T
Q  200 gataaaaagatatatgtttgttttgacatagtcacctcatctctaaatataagacgatttataagagaaaatgtatgtccttaaatataagactcactac 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  22832022 gataaaaagatatatgtttgttttgacatagtcacctcatctctaaatataagacgatttataaaagaaaatgtatgtccttaaatacaagactcactac 22832121  T
Q  300 aaattactaaatgcatttgttatttttcttcttctttctaatatacccctattaatactat 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22832122 aaattactaaatgcatttgttatttttcttcttctttctaatatacccctattaatactat 22832182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 356 - 568
Target Start/End: Original strand, 22835144 - 22835356
Alignment:
Q  356 actatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagataaaaaatttac 455  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||    
T  22835144 actataaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatatagcaatagatacatacatttcagataaaaattttac 22835243  T
Q  456 tccaaagacttttcttaatacacgtgacttttgtaaagtgttcttataaaaaaggacgaaggaaannnnnnncttcttgcaaaaatcgaggcgaaatttc 555  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||    
T  22835244 tccaaagacttttcttaagacacgtgatttttgtaaagtgttcttataaaaaaggatgaaggaaatttttttcttcttgcaaaaatcgaggcgaaatttc 22835343  T
Q  556 gagccacaggttc 568  Q
    |||||||| ||||    
T  22835344 gagccacatgttc 22835356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 22816243 - 22816350
Alignment:
Q  119 tttcaaacttgaatgtgtggacttgacaagttactattgattatgctgcaaatcaaatgatgaatgaatatgtggtggaaggataaaaagatatatgttt 218  Q
    ||||| |||||||||||||| ||||||   ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| ||      
T  22816243 tttcacacttgaatgtgtggccttgacctattactattgattatgctgcaaataaaatgatgaattaatacgtggtggaaggataaaaagatataagtgg 22816342  T
Q  219 gttttgac 226  Q
    ||||||||    
T  22816343 gttttgac 22816350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 354 - 568
Target Start/End: Original strand, 22886610 - 22886824
Alignment:
Q  354 atactatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagataaaaaattt 453  Q
    ||||||||||||||||  |||| ||| ||| |||| ||||||| |||| |||| |||||||||||||| || ||  ||| |||||||||| |||    ||    
T  22886610 atactatcaatttatctaagaatatgaaaattaactttgaatgcacttttataaaaagggtaatttagaaatagtaacacacatttcagacaaatttatt 22886709  T
Q  454 actccaaagacttttcttaatacacgtgacttttgtaaagtgttcttataaaaaaggacgaaggaaannnnnnncttcttgcaaaaatcgaggcgaaatt 553  Q
    |||| |||||||||| ||| ||| ||||| ||||||||||||||||| |||||||||| | ||| ||       |||| ||||||||||  || ||||||    
T  22886710 actcgaaagactttttttagtacccgtgatttttgtaaagtgttcttctaaaaaaggatggagggaaaatttttcttcatgcaaaaatcatggtgaaatt 22886809  T
Q  554 tcgagccacaggttc 568  Q
    |||||||||| ||||    
T  22886810 tcgagccacatgttc 22886824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 22886423 - 22886524
Alignment:
Q  128 tgaatgtgtggacttgacaagttactatt-------gattatgctgcaaatcaaatgatgaatgaatatgtggtggaaggataaaaagatatatgtttgt 220  Q
    |||||||||||||||||| ||||||||||       ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  22886423 tgaatgtgtggacttgaccagttactattgattattgattatgcttcaaatcaaatgatgaatgaatatgtggtggaaagataaaaagatatatgttggt 22886522  T
Q  221 tt 222  Q
    ||    
T  22886523 tt 22886524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 22810454 - 22810543
Alignment:
Q  1 tgtagtagtgggggaatatttttcaacgtattcatattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtcta 90  Q
    |||||||| |||||||| ||||||||||| | ||||||||||||| ||||||||||||||| |||||||||||| |||||| ||||||||    
T  22810454 tgtagtagcgggggaatgtttttcaacgtttacatattaagtgttcgatgctaaattgaatatgtgaaattaaatcatcaaagtcgtcta 22810543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 22810585 - 22810690
Alignment:
Q  120 ttcaaacttgaatgtgtggacttgacaagttactattgattatgctgcaaatcaaatgatgaatgaatatgtggtggaaggataaaaagatatatgtttg 219  Q
    |||| |||||||| |||| |||| |  |||||||||||||| |||||||||| ||||||| |||||||| ||||| ||||||| |||||||||||||| |    
T  22810585 ttcacacttgaatatgtgcactttagcagttactattgattttgctgcaaataaaatgattaatgaatacgtggttgaaggat-aaaagatatatgttgg 22810683  T
Q  220 ttttgac 226  Q
    |||||||    
T  22810684 ttttgac 22810690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 22894792 - 22894854
Alignment:
Q  35 tattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattctt 97  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  22894792 tattgagtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttctt 22894854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 22841490 - 22841545
Alignment:
Q  42 tgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattctt 97  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  22841490 tgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttctt 22841545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 22843080 - 22843135
Alignment:
Q  119 tttcaaacttgaatgtgtggacttgacaagttactattgattatgctgcaaatcaa 174  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22843080 tttcacacttgaatgtgtggacttgaccagttactattgattatgctgcaaatcaa 22843135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 22806109 - 22806199
Alignment:
Q  1 tgtagtagtgggggaatatttttcaacgtattcatattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaa 91  Q
    ||||||||||||  ||| |||||||| || | ||||||||||||||||||||||||||||| |||||||| || |||||| ||| ||||||    
T  22806109 tgtagtagtgggtaaatgtttttcaatgtttacatattaagtgtttgatgctaaattgaatatgtgaaatcaagacatcagtgttgtctaa 22806199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 22843134 - 22843214
Alignment:
Q  130 aatgtgtggacttgacaagttactattgattatgctgcaaatcaaatgatgaatgaatatgtggtggaaggataaaaagat 210  Q
    |||||||||| ||| |  ||||| |||||||||||||||||| |||||||||||||||| || |||||| |||||||||||    
T  22843134 aatgtgtggaattggccggttaccattgattatgctgcaaataaaatgatgaatgaatacgttgtggaaagataaaaagat 22843214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 22843005 - 22843059
Alignment:
Q  33 catattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgt 87  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||    
T  22843005 catattaagtgtttgatgctaaattgaatatgtgaaatcaaaacatctatgtcgt 22843059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 22859161 - 22859261
Alignment:
Q  1 tgtagtagtgggggaatatttttcaacgtattcatatt--aagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattctta 98  Q
    ||||||||||||||||| ||||||||||| |  |||||  |||| || ||||| ||||||||| |||||||||||||||| ||||| |||||| ||||||    
T  22859161 tgtagtagtgggggaatgtttttcaacgtttatatattcgaagtctt-gatgcaaaattgaatatgtgaaattaaaacattaatgttgtctaatttctta 22859259  T
Q  99 aa 100  Q
    ||    
T  22859260 aa 22859261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 22816032 - 22816095
Alignment:
Q  35 tattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattcttaaa 100  Q
    ||||||||||||||||||||||||||  | |||||||||||||||| |||| ||||| ||||||||    
T  22816032 tattaagtgtttgatgctaaattgaa--tatgaaattaaaacatcagtgtcatctaatttcttaaa 22816095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 22874013 - 22874070
Alignment:
Q  119 tttcaaacttgaatgtgtggacttgacaagttactattgattatgctgcaaatcaaat 176  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||| |||| ||||    
T  22874013 tttcacacttgaatgtgtggacttgaccggttactattgattatgctgtaaataaaat 22874070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 22886331 - 22886396
Alignment:
Q  33 catattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattctta 98  Q
    ||||||||||||||||||||||||||||| ||||||||| ||  ||||||||  ||||| ||||||    
T  22886331 catattaagtgtttgatgctaaattgaatatgtgaaatttaattatcaatgtgttctaatttctta 22886396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 22899055 - 22899113
Alignment:
Q  37 ttaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattctt 97  Q
    ||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||| ||||||    
T  22899055 ttaagtgtttgat-ctaaattgaatatgtgaaatt-aaacatcaatgtcatctatattctt 22899113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 22840890 - 22840950
Alignment:
Q  37 ttaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattctt 97  Q
    |||| |||||||||| ||| ||||| | ||||||||||||||||||||  ||||| |||||    
T  22840890 ttaaatgtttgatgcaaaaatgaatatatgaaattaaaacatcaatgttttctaatttctt 22840950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 21149910 - 21149819
Alignment:
Q  5 gtagtgggggaatatttttcaacgtattcatattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattct 96  Q
    |||||||| |||| |||||||| || | | | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  21149910 gtagtgggtgaatgtttttcaatgtttacgtgttaagtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttct 21149819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 513
Target Start/End: Original strand, 35877111 - 35877242
Alignment:
Q  381 aaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagataaaaaatttactccaaagacttttcttaatacacgt 480  Q
    |||||||||||||||||| |||||||||||||||||| ||| || || || | |||||| ||| |||    | ||||||   |||||| |||||||  ||    
T  35877111 aaaataacattgaatgtatttatatacaaagggtaatctagtaatagttatacacattttagacaaatttatcactccagcaacttttattaatacctgt 35877210  T
Q  481 gacttttgtaaagtgttcttataaaaaaggacg 513  Q
     | |||||||||||||||||||||||| |||||    
T  35877211 -atttttgtaaagtgttcttataaaaagggacg 35877242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 418
Target Start/End: Complemental strand, 897310 - 897241
Alignment:
Q  349 tattaatactatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatt 418  Q
    ||||||||||||| ||||||| | ||| ||| ||| ||||||| |||||| |||| ||||||| ||||||    
T  897310 tattaatactatctatttatcttggaatatgaaaagtaacattaaatgtatttatgtacaaagagtaatt 897241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 275 - 512
Target Start/End: Original strand, 4523922 - 4524154
Alignment:
Q  275 tgtccttaaatataagactcactacaaattactaaatgcatttgttatttttcttcttctttctaatatacccct-attaatactatcaatttatcatag 373  Q
    ||||| |||||||||||||| ||||||||||||| |||||||| | | | || |||      | | ||||||||| |||||||| ||| | ||||| | |    
T  4523922 tgtccctaaatataagactcgctacaaattactagatgcatttatcactctttttc------caattataccccttattaataccatctaattatcttgg 4524015  T
Q  374 aaaatgcaaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagataaaaaatttactccaaagacttttcttaa 473  Q
    || |||  || ||| |||||||| | |||| |||||||| |||||||| || ||  ||| |||||||||| |||    |||||||||  |||||||||||    
T  4524016 aatatgataagtaatattgaatgcatttatctacaaaggataatttagtaatagtcacacacatttcagacaaatttattactccaacaacttttcttaa 4524115  T
Q  474 tacacgtgacttttgtaaagtgttcttataaaaaaggac 512  Q
    ||| ||||  |||| || ||||||||||| |||| ||||    
T  4524116 tacccgtgttttttttagagtgttcttattaaaagggac 4524154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 421
Target Start/End: Complemental strand, 52934570 - 52934488
Alignment:
Q  340 atatacccct-attaatactatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatttag 421  Q
    |||||||||| |||||||| ||||||| ||| | ||| ||| ||| |||||||||||||| ||||| ||||||| ||||||||    
T  52934570 atataccccttattaatacaatcaattcatcttggaatatgaaaagtaacattgaatgtatttataaacaaaggataatttag 52934488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 445
Target Start/End: Complemental strand, 3242 - 3152
Alignment:
Q  355 tactatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagata 445  Q
    |||||| |||||||| |  || ||| ||||||||||| ||| || ||||| ||||| | |||||||| ||||||  |||||||||||||||    
T  3242 tactattaatttatcttgaaatatgaaaaataacattaaatatatttatacacaaatgataatttagtaacagacgcatacatttcagata 3152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 323
Target Start/End: Original strand, 42447348 - 42447390
Alignment:
Q  281 taaatataagactcactacaaattactaaatgcatttgttatt 323  Q
    ||||||||||||||| |||||||||||| |||||||| |||||    
T  42447348 taaatataagactcattacaaattactagatgcatttattatt 42447390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 513
Target Start/End: Complemental strand, 29675606 - 29675556
Alignment:
Q  463 acttttcttaatacacgtgacttttgtaaagtgttcttataaaaaaggacg 513  Q
    |||||||||||||| ||||| |||||||||||  ||||||||||| |||||    
T  29675606 acttttcttaatactcgtgatttttgtaaagtaatcttataaaaagggacg 29675556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 508
Target Start/End: Complemental strand, 35984887 - 35984842
Alignment:
Q  463 acttttcttaatacacgtgacttttgtaaagtgttcttataaaaaa 508  Q
    |||| ||||||||| ||||| |||||||||||||||| ||||||||    
T  35984887 acttatcttaatacccgtgatttttgtaaagtgttctaataaaaaa 35984842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University