View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16627_low_5 (Length: 519)
Name: NF16627_low_5
Description: NF16627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16627_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 8 - 501
Target Start/End: Complemental strand, 19351922 - 19351442
Alignment:
| Q |
8 |
gacatcatcataaagaaaagttagaagatgatgaattcaaatgaaatggtgataaatcaacccatgacatagaagttgaggctgcaatgtaacttatcca |
107 |
Q |
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| T |
19351922 |
gacaccataataaagaaaagttagaagatgatgaattcaaatgaaatggtgataaatcaacccatgacatagaagttgaggctgcaatataacttatcca |
19351823 |
T |
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| Q |
108 |
aaatatggtcaaccttaaatattaaaccaatttgaaagagacatagatttgaaatatagatttgaaagagacagagatttgaaaagataaccacttaggt |
207 |
Q |
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| T |
19351822 |
aaatatggtcaaccttaaatattaaaccaatttgaaagagacatagatttgaaa-------------gagacagagatttgaaaagataaccacttaggt |
19351736 |
T |
|
| Q |
208 |
tagcttgagaccttggaatgttctcttctaaagatctcagctgatacaattttcctggtaccaatttatgtggactagttcatatgaagctttgctgaaa |
307 |
Q |
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| T |
19351735 |
tagcttgagaccttggagtgttctcttcttaagatctcagctgatacaattttcctggtaccaatttatgtggactagttcatatgaagctttgctgaaa |
19351636 |
T |
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| Q |
308 |
atatgatagagacaaccaaatcgcacccgaaaacaactaaattgcaccaaataatacaagaaacctatcgaaaaaggtagaagttgaatgatgcaaaaat |
407 |
Q |
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||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19351635 |
atatgctggagacaaccaaatcgcacccgaaaacaacaaaattgcaccaaataatacaagaaacctatcgaaaaaggtagaaattgaatgatgcaaaaat |
19351536 |
T |
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| Q |
408 |
tggaaagaatccacaacgccaaaaagaaaatgcaccgctaggaaaataggaacaaacaccaccacgttgggaaataaccagaaccacataccac |
501 |
Q |
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| T |
19351535 |
tggaaagaatccacaatgccaaaaagaaaatgcaccgctacaaaaataggaacaaacaccaccacgttgggaaataaccagaaccacataccac |
19351442 |
T |
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