View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16627_low_7 (Length: 453)
Name: NF16627_low_7
Description: NF16627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16627_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 40740252 - 40739808
Alignment:
| Q |
1 |
caacttagtagagttgtttgcacccccaagggccgaccctgttaattacgttgtgtaccctagagaattgctcccagaggatgcgccccagaagaaccct |
100 |
Q |
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||||| ||||||| ||||||||||||||||| |||||||| ||| ||||| | ||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
40740252 |
caactcagtagagctgtttgcacccccaaggaccgaccctattagttacgctatgtaccctagagaattgctcccagaggatgcacctcagaagaaccct |
40740153 |
T |
|
| Q |
101 |
ggaggatcatcacaaaggaaccctagaggatcaccgcataggatgtgttggttcattagtctagtctaccgtgttatgatctatataccgtagattataa |
200 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | |
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| T |
40740152 |
ggaggatcatcacaaaggaaccctagaggatcgccctataggatgtgttggttcattagtctagtctacagtgttatgatctatatactgtagattatca |
40740053 |
T |
|
| Q |
201 |
caagtttgttagaggttacacaattactaaccaaatgacactggttagaagttagtttgataagattgagttaattagagattaacttaatcatagagtt |
300 |
Q |
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|||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40740052 |
caagtttgttagagtttagacaattactaaccagctgacactggttagaagttagtttgataagattgagttaattagagattaacttaatcatagagtt |
40739953 |
T |
|
| Q |
301 |
aacttggtagtcaagtaaccatacccaagtctatataaaggggttattgtactgtgtatttcatcaagtgttttcacaacttctccattggatactttac |
400 |
Q |
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| T |
40739952 |
aacttggtagtcaagtaaccatacccaagtctatataaaggggttattgtactgtgtatttcatcaagtgttttcacaacttctccattggatactttac |
40739853 |
T |
|
| Q |
401 |
atagttttcattcactcattcttcttctaaattgttattcatctc |
445 |
Q |
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| T |
40739852 |
atagttttcattcactcattcttcttctaaattgttattcatctc |
40739808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 55212270 - 55212345
Alignment:
| Q |
246 |
tagaagttagtttgataagattgagttaattagagattaacttaatcatagagttaacttggtagtcaagtaaccat |
322 |
Q |
| |
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| T |
55212270 |
tagaagttggtttgataaggatgagttagttagagattagca-aatcatatggtttacttggtagtcaagtaaccat |
55212345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 323
Target Start/End: Original strand, 38163116 - 38163170
Alignment:
| Q |
269 |
agttaattagagattaacttaatcatagagttaacttggtagtcaagtaaccata |
323 |
Q |
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| T |
38163116 |
agttaattagaaattaacttgatcatagggtttacttggtagtcaagtaaccata |
38163170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 22311161 - 22311081
Alignment:
| Q |
247 |
agaagttagtttgataagattgagtta----attagagattaacttaatcatagagttaacttggtagtcaagtaaccata |
323 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| |||||||| |||||| |||| ||||| ||||| |||||||||| |
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| T |
22311161 |
agaagttagtttaataagattgagttagttgattagatattaacttgatcataaagtttacttgatagtcgagtaaccata |
22311081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 38163190 - 38163249
Alignment:
| Q |
330 |
tctatataaaggggttattgtactgtgtatttcatcaagtgttttcacaacttctccatt |
389 |
Q |
| |
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|||||||||| ||||||||| ||| |||||||||||| |||||||||||||||||||| |
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| T |
38163190 |
tctatataaaagggttattgcactatgtatttcatcataagttttcacaacttctccatt |
38163249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 323
Target Start/End: Original strand, 34015908 - 34015962
Alignment:
| Q |
269 |
agttaattagagattaacttaatcatagagttaacttggtagtcaagtaaccata |
323 |
Q |
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||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||| |
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| T |
34015908 |
agttatttagagattaacttgatcatagagtttacttgtcagtcaagtaaccata |
34015962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 43935917 - 43935836
Alignment:
| Q |
246 |
tagaagttagtttgataagattgagttaattag----agattaacttaatcatagagttaacttggtagtcaagtaaccata |
323 |
Q |
| |
|
|||||||||||| |||||||||||| ||| ||| |||||||||||||||||| ||| ||||| ||||||||||||||| |
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| T |
43935917 |
tagaagttagttggataagattgagataaatagttaaagattaacttaatcatagcgtttacttgacagtcaagtaaccata |
43935836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 29661918 - 29661870
Alignment:
| Q |
275 |
ttagagattaacttaatcatagagttaacttggtagtcaagtaaccata |
323 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||||| |||||||| |
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| T |
29661918 |
ttagagattaacttgatcatagagtttacttgttagtcaattaaccata |
29661870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 23398124 - 23398069
Alignment:
| Q |
268 |
gagttaattagagattaacttaatcatagagttaacttggtagtcaagtaaccata |
323 |
Q |
| |
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|||||| ||||||| | |||| ||||||||||| ||||| |||||||||||||||| |
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| T |
23398124 |
gagttagttagagacttacttgatcatagagtttacttgttagtcaagtaaccata |
23398069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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