View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16628_high_15 (Length: 239)
Name: NF16628_high_15
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16628_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 47870256 - 47870466
Alignment:
| Q |
19 |
ccaatctcatttaattacgaaggctttaaatatgatgatgtgaagctagaaggagatgcttctttgttggattcatacattcaacttacttcaacctcaa |
118 |
Q |
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| T |
47870256 |
ccaatctcatttaattacgaaggctttaaatatgatgatgtgaagctagaaggagatgcttctttgttggattcatacattcaacttacttcaacctcaa |
47870355 |
T |
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| Q |
119 |
ggtaccaaagcaacgctttcagtgttggtcgagtcacgtttttcgagccattgcaactatgggacaagacctcaagaaaaatcaccgatttcactactaa |
218 |
Q |
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| T |
47870356 |
ggtaccaaagcaatgctttcagtgttgggcgagtcacgtttttcgagccattgcaactatgggacaagacctcaagaaaaatcactgatttcactactaa |
47870455 |
T |
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| Q |
219 |
attttcctttg |
229 |
Q |
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| T |
47870456 |
attttcctttg |
47870466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 47875275 - 47875061
Alignment:
| Q |
18 |
accaatctcatttaattacgaa---ggctttaaatatgatgatgtgaagctagaaggagatgcttctttgttggattcatacattcaacttacttcaacc |
114 |
Q |
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|||| |||||||||||||| || ||||||||||||||| ||||||| ||||||||||||||||||||| | |||||| ||| ||||| ||||||||| |
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| T |
47875275 |
accactctcatttaattaccaacagggctttaaatatgataatgtgaaactagaaggagatgcttctttgctttattcatccatccaactgacttcaacc |
47875176 |
T |
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| Q |
115 |
tcaaggtaccaaagcaacgctttcagtgttggtcgagtcacgtttttcgagccattgcaactatgggacaagacctcaagaaaaatcaccgatttcacta |
214 |
Q |
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| T |
47875175 |
tcaagttacgaagacgaaacttacagtgttgggagagtgacatgttttgagccattgcaactatgggaaaagacctcaagaaaactcactgatttcacta |
47875076 |
T |
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| Q |
215 |
ctaaattttcctttg |
229 |
Q |
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| T |
47875075 |
cccaattttcctttg |
47875061 |
T |
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