View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16628_high_20 (Length: 211)
Name: NF16628_high_20
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16628_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 16607303 - 16607479
Alignment:
| Q |
11 |
gaagaatatcaagagacttggatcgttgaaagaaatcaattgctccattggaannnnnnngtatattgtaattagtgtatgatcgtcacatgtaaataag |
110 |
Q |
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| T |
16607303 |
gaagaatttcaggagacttggatcgttgaaagaaatcaattgctccattggaatttttttgtatattgtaattagtgtatga--gtcacatgtaaataag |
16607400 |
T |
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| Q |
111 |
aggtatgagattttgtatggaccatattcttcgatgaaattagtctcaaatatgt--tagtagatatatgaactaaagg |
187 |
Q |
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| T |
16607401 |
aggtatgagattttgtatggaccatattcttcgatgaaattagtctcaaatatgttatagtagatatatgaactaaagg |
16607479 |
T |
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