View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16628_high_6 (Length: 450)
Name: NF16628_high_6
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16628_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 15 - 434
Target Start/End: Complemental strand, 25416166 - 25415743
Alignment:
| Q |
15 |
catagggcccacaacaactacttggttcctcctcagccacacaagtaccaaacagaccccactctagctgttacatattaatacgtaactattcaagatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25416166 |
catagggcccacaacaactacttggttcctcctcagccacacaagtaccaaacagaccccactctagctgttacatattaatacgtaactattcaagatc |
25416067 |
T |
|
| Q |
115 |
taacactaaagatcctttatcttctcattcacacactcactatattttgcacggtccaaaacat----ctttgttctatatcctaatcttttttatccat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25416066 |
taacactaaagatcctttatcttctcattcacacactcactatattttgcatggtccaaaacatacatctttgttctatatcctaatcttttttatccat |
25415967 |
T |
|
| Q |
211 |
tcatctatacttttgactttctttggcttgagaaaccaaaagggtttggaatattatacaagaaaatataggtgtttaaattattggaagagaagaagag |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25415966 |
tcatctatacttttgactttctttggcttgagaaaccaaaagggtttggaatattatacaagaaaatataggtgtttaaattattggaagagaagaagat |
25415867 |
T |
|
| Q |
311 |
ttttgttaaggctaagatgaaaatacagtgtgatgtgtgtgaaaaagcacctgctacggtgatttgttgtgctgatgaagctgctttgtgttctaaatgt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25415866 |
ttttgttaaggctaagatgaaaatacagtgtgatgtgtgtgaaaaagcacctgctacggtgatttgttgtgctgatgaagctgctttgtgtgctaaatgt |
25415767 |
T |
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| Q |
411 |
gatgttgaagttcatgctgctaat |
434 |
Q |
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| T |
25415766 |
gatgttgaagttcatgctgctaat |
25415743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 327 - 433
Target Start/End: Complemental strand, 42409848 - 42409742
Alignment:
| Q |
327 |
atgaaaatacagtgtgatgtgtgtgaaaaagcacctgctacggtgatttgttgtgctgatgaagctgctttgtgttctaaatgtgatgttgaagttcatg |
426 |
Q |
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|||||||| ||||||||||||||||| ||||| || || || |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
42409848 |
atgaaaattcagtgtgatgtgtgtgagaaagctccagcaacaatgatttgttgtgctgatgaagctgctttgtgtgctaaatgtgatattgaagttcatg |
42409749 |
T |
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| Q |
427 |
ctgctaa |
433 |
Q |
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||||||| |
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| T |
42409748 |
ctgctaa |
42409742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 434
Target Start/End: Original strand, 31094197 - 31094258
Alignment:
| Q |
373 |
tttgttgtgctgatgaagctgctttgtgttctaaatgtgatgttgaagttcatgctgctaat |
434 |
Q |
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||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |
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| T |
31094197 |
tttgttgtgctgatgaagctgctttatgttgggaatgtgatgagaaagttcatgctgctaat |
31094258 |
T |
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