View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16628_high_9 (Length: 383)
Name: NF16628_high_9
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16628_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 25 - 165
Target Start/End: Original strand, 16607496 - 16607636
Alignment:
| Q |
25 |
gatttgaaaagcttacaataaaaaagcaatggcttttcattttaacagattaataatttgtgtaaagttgaaaaggaaggtgtttacactagggaggtgt |
124 |
Q |
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| T |
16607496 |
gatttgaaaagcttacaataaaaaagcaatggcttttcattttaacagattaataatttgtgtaaagttgaaaaggaaggtgtttacactagggaggtgt |
16607595 |
T |
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| Q |
125 |
ttttgttgtttaagaccttccctttttctattattttgttg |
165 |
Q |
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| T |
16607596 |
ttttgttgtttaagaccttccctttttctattattttgttg |
16607636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 221 - 367
Target Start/End: Original strand, 16607692 - 16607838
Alignment:
| Q |
221 |
gaatattacatgacccttggatccatgataactttannnnnnnnatttcaatcaaattccaagcttacattacatctagcaaatataatgaatcaaattt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16607692 |
gaatattacatgacccttggatccatgataactttattttttttatttcaatcaaattccaagcttacattacatctagcaaatataatgaatcaaattt |
16607791 |
T |
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| Q |
321 |
attacttcaatcatctaaatgtagtccttcagtgtaaggtacatctg |
367 |
Q |
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| T |
16607792 |
attacttcaatcatctaaatgtagtccttcagtgtaaggtacatctg |
16607838 |
T |
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