View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16628_low_10 (Length: 412)
Name: NF16628_low_10
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16628_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 398
Target Start/End: Original strand, 19214134 - 19214513
Alignment:
| Q |
19 |
cttacaaagttcccatttttaaaatcacccattaatcaataccaaaaaccattgtaaaaatttttcaattgcctgcaaaatataaaccataattttcatc |
118 |
Q |
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| T |
19214134 |
cttacaaagttcccatttttaaaatcacccatgaatcaatcccaaaaaccattgtaaattttttccaattgcctgcaaaatataaaccataattttcatc |
19214233 |
T |
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| Q |
119 |
tccttccttacaaccaaagtttcaatttttaaaaccattcatgaatcaatagccaaaacccattacaaaatttccccaattacctccaaaaagggaattt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19214234 |
tccttccttacaaccaaagtttcaatttttaaaaccattcatgaatcaatagccaaaacccattacagaatttccccaattacctccaaaaagggaattt |
19214333 |
T |
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| Q |
219 |
cagacatcaaatttatgaaattagggtttttacttatttgtgcgcaaattaggaattcagagagaaggcaagcacttacgtagcagaaacgtagtggatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
19214334 |
cagacatcaaatttatgaaattagggtttttacttatttgtgcgcaaattaggaattcagagagaaggcaagcacttacgtagctgaaaggtagtggatg |
19214433 |
T |
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| Q |
319 |
aagattctggcactttcggagaatgcaagaagagcgtctttgtgaacggcaatgtcgccgtcttcggagcaagtggaaag |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19214434 |
aagattctggcactttcggagaatgcaagaagagcgtctttgtgaacggcaatgtcgccgtcgtcggagcaagtggaaag |
19214513 |
T |
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