View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16628_low_12 (Length: 366)
Name: NF16628_low_12
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16628_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 56469065 - 56468728
Alignment:
| Q |
18 |
atggaaatgtatgttgatatgcatcatattacaaacaagtcatcgtatacagttgtggaaacaatgtctctagctaaaactgcagttcttttccgtgagc |
117 |
Q |
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| T |
56469065 |
atggaaatgtatgttgatatgcatcatattaccaacaagtcatcgtatacagttgtggaaacaatgtctctagctaaaactgcagttcttttccgtgagc |
56468966 |
T |
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| Q |
118 |
ttggcctcaggcatttgttggtggtgccaaagacatccggagtaagaaacaatatactattacaatcttgaataaacatatccatgtatttaagtataca |
217 |
Q |
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| T |
56468965 |
ttggcctcaggcatttgttggtggtgccaaagacatccggagtaagaaacaatatactattacaatcttgaataaacatatccatgcatttaagtataca |
56468866 |
T |
|
| Q |
218 |
ttggctgactttgcaatcattaattacaattatccttgtttgttggctgggagtgagtattaactaacaattactaatatttgtggttgttatgcagaga |
317 |
Q |
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| T |
56468865 |
ttggctgactttgcaatcattaattacaattatccttgtatgttggctgggagtgagtattaactaacaattactaatatttgtggttgttatgcagaga |
56468766 |
T |
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| Q |
318 |
cctccaattgtgggaatcttgacaaggcacgacttcat |
355 |
Q |
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| T |
56468765 |
cctccaattgtggggatcttgacaaggcacgacttcat |
56468728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 155495 - 155640
Alignment:
| Q |
18 |
atggaaatgtatgttgatatgcatcatattacaaacaagtcatcgtatacagttgtggaaacaatgtctctagctaaaactgcagttcttttccgtgagc |
117 |
Q |
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|||||||||||||||||| | |||| || ||||| | || | ||||| ||||| |||||||||||||| || ||| |||| |||| || || |||| |
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| T |
155495 |
atggaaatgtatgttgatcttcatccaatcacaaatacttctccatatactgttgttgaaacaatgtctcttgcaaaagctgctcttctgtttcgggagc |
155594 |
T |
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| Q |
118 |
ttggcctcaggcatttgttggtggtgccaaagacatccggagtaag |
163 |
Q |
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| T |
155595 |
ttggactcaggcatttgctagttgtgcctaagaaaccaggagtaag |
155640 |
T |
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