View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16628_low_15 (Length: 272)
Name: NF16628_low_15
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16628_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 38898750 - 38898983
Alignment:
| Q |
1 |
ttaatattagtttccaactatttggtgcaatgctcatgtaaaagatcttaacctctttcctggtactagtactagtactactaaaattcatttctttcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38898750 |
ttaatattagtttccaactatttggtgcaatgctcatgtaaaagatcttaacctctttcctggtactagtactagtactactaaaatttatttctttcat |
38898849 |
T |
|
| Q |
101 |
ttaagcttatggaagcaattttgtcaacctatattttataatttgaatattttagattcacgattagcttccctctatataaagagtactcacataaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38898850 |
ttaagcttatggaagcaattttgtcaacctatattttataatttgaatattttagattcacgattagcttccctctatataaagagtactcacataaata |
38898949 |
T |
|
| Q |
201 |
ttctagcaagtagtacctgtcagaattatctacc |
234 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
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| T |
38898950 |
ttctagcaagtagtacctgtcataattatctacc |
38898983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 38645763 - 38645543
Alignment:
| Q |
1 |
ttaatattagtttccaactatttggtgcaatgctcatgtaaa-agatcttaacctctttcctggtactagtactagtactactaaaattcatttctttca |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| |
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| T |
38645763 |
ttaatattagtttccaactatttggtgcaatgctcatgtaaagagatcttaacctctttcctagtactagtacaagtactactaaaattaatttctttca |
38645664 |
T |
|
| Q |
100 |
tttaagcttatggaagcaattttgtcaacctatattttataatttgaatattttagattcacgattagcttccctctatataaagagtactcacataaat |
199 |
Q |
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||||||||| ||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||||||| ||||||||| ||||||||||| | ||| |
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| T |
38645663 |
tttaagcttgtggaagcaactttgtcaacctatattttatgatttgaataattcagattcacgattagcttctctctatatagagagtactcacgtgaat |
38645564 |
T |
|
| Q |
200 |
attctagcaagtagtacctgt |
220 |
Q |
| |
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|| |||||||||||||||||| |
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|
| T |
38645563 |
atcctagcaagtagtacctgt |
38645543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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