View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16628_low_17 (Length: 256)
Name: NF16628_low_17
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16628_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 38321364 - 38321597
Alignment:
| Q |
18 |
gttcttgcactgggagcagttcttgacccacggatgaagttttctacattggctcattgttactcaaaacttgatgtttcggcctgtgaaaggaagttgc |
117 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38321364 |
gttcttgcattgggagcggttcttgacccacggatgaagttttctacattggctcattgttactcaaaacttgatgtttcggcctgtgaaaggaagttgc |
38321463 |
T |
|
| Q |
118 |
aagaagtaaagagtaagttgtacatgctatttgacaagtattctagcaaaagtatttcttctggggtgcaaagaactattcaggacgaatcttctagcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38321464 |
aagaagtaaagagtaagttgtacatgctatttgacaagtattctagcaaaagtatttcttctggggtgcaaagaactattcaggacgaatcttctagcat |
38321563 |
T |
|
| Q |
218 |
gccattgcaaaagaaattgaagtcttcatctcac |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
38321564 |
gccattgcaaaagaaattgaagtcttcatctcac |
38321597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 38317269 - 38317502
Alignment:
| Q |
18 |
gttcttgcactgggagcagttcttgacccacggatgaagttttctacattggctcattgttactcaaaacttgatgtttcggcctgtgaaaggaagttgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||| || |||| || |||||||| |
|
|
| T |
38317269 |
gttcttgcactgggagcagttcttgacccacggatgaagttttcgacgttggcttattgttactcaaaacttgatccatcaacctgcgagcagaagttgc |
38317368 |
T |
|
| Q |
118 |
aagaagtaaagagtaagttgtacatgctatttgacaagtattctagcaaaagtatttcttctggggtgcaaagaactattcaggacgaatcttctagcat |
217 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| | ||||||||| ||||||| ||||||||| ||| |
|
|
| T |
38317369 |
aactagtaaagagaaagttgtacatgctatttgacaagtattctagcaaaagcacttcttctggcctaaaaagaactactcaggaccaatcttctaccat |
38317468 |
T |
|
| Q |
218 |
gccattgcaaaagaaattgaagtcttcatctcac |
251 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||| |
|
|
| T |
38317469 |
gccattgcaaaagaaattaaagtctttatctcac |
38317502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 38309266 - 38309498
Alignment:
| Q |
18 |
gttcttgcactgggagcagttcttgacccacggatgaagttttctacattggctcattgttactcaaaacttgatgtttcggcctgtgaaaggaagttgc |
117 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||| ||| |||| ||||||||| ||||||||||||||||| ||| || |||| ||||||||||||| |
|
|
| T |
38309266 |
gttcttgcattgggagcggttcttgacccaaggataaagctttccacattggcttattgttactcaaaacttaatgcatcaacctgcgaaaggaagttgc |
38309365 |
T |
|
| Q |
118 |
aagaagtaaagagtaagttgtacatgctatttgacaagtattctagcaaaagtatttcttctggggtgcaaagaactattcaggacgaatcttctagcat |
217 |
Q |
| |
|
| |||||||||| |||||||||||||||||| ||||| ||||| ||||||||| ||||||||| ||||||||||| ||||||||| |||||||||| | |
|
|
| T |
38309366 |
agcaagtaaagagcaagttgtacatgctatttcacaagaattcttgcaaaagtacttcttctggcgtgcaaagaacaattcaggaccaatcttctagtgt |
38309465 |
T |
|
| Q |
218 |
gccattgcaaaagaaattgaagtcttcatctca |
250 |
Q |
| |
|
||||||||||||||| || ||||||| |||||| |
|
|
| T |
38309466 |
gccattgcaaaagaagttaaagtctttatctca |
38309498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 38300619 - 38300833
Alignment:
| Q |
18 |
gttcttgcactgggagcagttcttgacccacggatgaagttttctacattggctcattgttactcaaaacttgatgtttcggcctgtgaaaggaagttgc |
117 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||| ||| |||| ||||||||| ||||||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
38300619 |
gttcttgcaatgggagcggttcttgacccaaggattaagctttcaacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgc |
38300718 |
T |
|
| Q |
118 |
aagaagtaaagagtaagttgtacatgctatttgacaagtattctagcaaaagtatttcttctggggtgcaaagaactattcaggacgaatcttctagcat |
217 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| | |||||||||| ||| |||||| ||||||||||||| |
|
|
| T |
38300719 |
aacaagtaaagagcaagttgtacatgctatttgacaagtattctagcaaaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcat |
38300818 |
T |
|
| Q |
218 |
gccattgcaaaagaa |
232 |
Q |
| |
|
|||||| ||| |||| |
|
|
| T |
38300819 |
gccatttcaagagaa |
38300833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 38326114 - 38326347
Alignment:
| Q |
18 |
gttcttgcactgggagcagttcttgacccacggatgaagttttctacattggctcattgttactcaaaacttgatgtttcggcctgtgaaaggaagttgc |
117 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
38326114 |
gttcttgcattgggagcggttcttgacccacggattaaattttcaacattggcttattgttactcaaaacttgatgcatcaacctgtgaaaggaagttgc |
38326213 |
T |
|
| Q |
118 |
aagaagtaaagagtaagttgtacatgctatttgacaagtattctagcaaaagtatttcttctggggtgcaaagaactattcaggacgaatcttctagcat |
217 |
Q |
| |
|
|| |||||| || ||||||||||||||||||| ||||||||||||| || ||| ||||||||| ||||||||||| |||||| | ||||||| | ||| |
|
|
| T |
38326214 |
aacaagtaaggacgaagttgtacatgctatttggcaagtattctagccaacgtacttcttctggcatgcaaagaactgttcagggccaatcttcgaccat |
38326313 |
T |
|
| Q |
218 |
gccattgcaaaagaaattgaagtcttcatctcac |
251 |
Q |
| |
|
| ||||||||||||| | ||||||| ||||||| |
|
|
| T |
38326314 |
gtcattgcaaaagaactccaagtctttatctcac |
38326347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 38313858 - 38314089
Alignment:
| Q |
18 |
gttcttgcactgggagcagttcttgacccacggatgaagttttctacattggctcattgttactcaaaacttgatgtttcggcctgtgaaaggaagttgc |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||||||| ||| || | |||||| ||||||||| |
|
|
| T |
38313858 |
gttcttgcaatgggagcagttcttgacccacggatgaaattttcaagattggctgcttgttactcaaaactagatccatcaacttgtgaacggaagttgc |
38313957 |
T |
|
| Q |
118 |
aagaagtaaagagtaagttgtacatgctatttgacaagtattctagcaaaagtatttcttctggggtgcaaagaactattcaggacgaatcttctagcat |
217 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||| |||||| ||||||||||||| ||||||| ||||||||| ||||||| ||| | ||||||||| ||| |
|
|
| T |
38313958 |
aaaaagtaaagacaaagttgtacatgctatttgccaagtactctagcaaaagtacttcttctagggtgcaaacaactatttagggccaatcttctaccat |
38314057 |
T |
|
| Q |
218 |
gccattgcaaaagaaattgaagtcttcatctc |
249 |
Q |
| |
|
||||||||||||||| | |||||||||||| |
|
|
| T |
38314058 |
gccattgcaaaagaactctgagtcttcatctc |
38314089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 38306540 - 38306730
Alignment:
| Q |
42 |
gacccacggatgaagttttctacattggctcattgttactcaaaacttgatgtttcggcctgtgaaaggaagttgcaagaagtaaagagtaagttgtaca |
141 |
Q |
| |
|
|||||||||||||| || || | |||||| |||||||||||||||| ||| || | |||||| ||||||||||| ||||||||| |||||||||| |
|
|
| T |
38306540 |
gacccacggatgaaattctcaaggttggctgattgttactcaaaactcgatccatcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtaca |
38306639 |
T |
|
| Q |
142 |
tgctatttgacaagtattctagcaaaagtatttcttctggggtgcaaagaactattcaggacgaatcttctagcatgccattgcaaaagaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||| |||| |||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
38306640 |
tgctatttgacaagtattctagcaaaagtacttcttctggtatgcaaacaactgttcagggccaatcttctaccatgccattgcaaaagaa |
38306730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 38850076 - 38849835
Alignment:
| Q |
18 |
gttcttgcactgggagcagttcttgacccacggatgaagttttctacattggctcattgttactcaaaacttgatgtttcggcctgtgaaaggaagttgc |
117 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||| | || |||||| ||||||| |||||||| |||| || |||||||||||||| | | |
|
|
| T |
38850076 |
gttcttgcattgggagcggttcttgacccacggatgaagtttacaaccttggcttattgttattcaaaactggatgcatcaacctgtgaaaggaagctac |
38849977 |
T |
|
| Q |
118 |
aagaagtaaagagtaagttgtacatgctatttgacaagtattctagcaaaagtatttcttctggggtgcaaagaactat---------tcaggacgaatc |
208 |
Q |
| |
|
| |||||||||| ||||||| |||||||||||| ||| ||||| |||| || | | || ||||||| ||||||||||| ||||||| |||| |
|
|
| T |
38849976 |
agcaagtaaagagaaagttgtgcatgctatttgagaagcattctggcaacagcactactgctggggttcaaagaactattaaggagaatcaggaccaatc |
38849877 |
T |
|
| Q |
209 |
ttctagcatgccattgcaaaagaaattgaagtcttcatctca |
250 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
38849876 |
ttctagcatgccattacaaaagaaattaaagtctttatctca |
38849835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University