View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16628_low_2 (Length: 583)

Name: NF16628_low_2
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16628_low_2
NF16628_low_2
[»] chr3 (25 HSPs)
chr3 (9-348)||(14593839-14594180)
chr3 (387-569)||(14594219-14594400)
chr3 (24-156)||(39009830-39009957)
chr3 (102-157)||(53739534-53739589)
chr3 (102-157)||(39009829-39009884)
chr3 (102-156)||(45502802-45502856)
chr3 (102-156)||(53739438-53739492)
chr3 (102-156)||(30675079-30675133)
chr3 (102-156)||(45502712-45502766)
chr3 (24-94)||(53739518-53739588)
chr3 (102-157)||(36458624-36458679)
chr3 (24-95)||(45502712-45502783)
chr3 (24-95)||(53739438-53739509)
chr3 (33-95)||(46890401-46890463)
chr3 (33-91)||(48287991-48288049)
chr3 (23-96)||(45502784-45502857)
chr3 (33-81)||(35504808-35504855)
chr3 (115-151)||(43493900-43493936)
chr3 (22-65)||(35504893-35504936)
chr3 (102-156)||(14593854-14593908)
chr3 (102-156)||(35504880-35504934)
chr3 (24-78)||(39009903-39009957)
chr3 (33-95)||(43493796-43493858)
chr3 (24-81)||(30675079-30675136)
chr3 (33-90)||(36458709-36458765)
[»] scaffold0012 (4 HSPs)
scaffold0012 (9-166)||(42448-42600)
scaffold0012 (400-484)||(42137-42221)
scaffold0012 (221-296)||(42364-42439)
scaffold0012 (102-156)||(42531-42585)
[»] chr4 (17 HSPs)
chr4 (27-144)||(35820523-35820648)
chr4 (102-156)||(3435241-3435295)
chr4 (24-95)||(41554069-41554140)
chr4 (102-151)||(35820525-35820574)
chr4 (35-95)||(3435156-3435216)
chr4 (102-157)||(3435144-3435199)
chr4 (24-94)||(3435225-3435295)
chr4 (102-156)||(41554086-41554140)
chr4 (36-92)||(35820592-35820648)
chr4 (24-95)||(41553990-41554061)
chr4 (102-156)||(25124703-25124757)
chr4 (102-156)||(42183156-42183210)
chr4 (103-152)||(33118290-33118339)
chr4 (24-93)||(42183156-42183225)
chr4 (35-95)||(33118272-33118332)
chr4 (55-95)||(35005129-35005169)
chr4 (109-157)||(41553989-41554037)
[»] chr2 (11 HSPs)
chr2 (102-156)||(23962268-23962322)
chr2 (102-156)||(25312553-25312607)
chr2 (23-94)||(23962267-23962338)
chr2 (100-156)||(25312457-25312513)
chr2 (24-94)||(25312457-25312527)
chr2 (102-156)||(23962364-23962418)
chr2 (24-81)||(23962361-23962418)
chr2 (34-73)||(1204458-1204497)
chr2 (24-81)||(25312550-25312607)
chr2 (36-81)||(43341136-43341181)
chr2 (36-81)||(43341217-43341262)
[»] scaffold0014 (2 HSPs)
scaffold0014 (23-95)||(133211-133283)
scaffold0014 (102-156)||(133228-133282)
[»] chr1 (24 HSPs)
chr1 (24-94)||(29070692-29070762)
chr1 (36-93)||(11322436-11322493)
chr1 (36-93)||(11480457-11480514)
chr1 (35-91)||(47507645-47507701)
chr1 (102-156)||(29070612-29070666)
chr1 (102-156)||(29070708-29070762)
chr1 (102-156)||(41562992-41563046)
chr1 (36-94)||(47507571-47507629)
chr1 (23-95)||(29070611-29070683)
chr1 (102-149)||(34184436-34184483)
chr1 (45-95)||(34500165-34500215)
chr1 (21-90)||(41562989-41563058)
chr1 (24-93)||(41563073-41563142)
chr1 (24-81)||(49317047-49317104)
chr1 (34-81)||(14442416-14442463)
chr1 (102-156)||(49586241-49586296)
chr1 (102-156)||(14442406-14442460)
chr1 (102-156)||(27732277-27732331)
chr1 (33-95)||(34184438-34184500)
chr1 (102-156)||(49586338-49586392)
chr1 (102-156)||(52826223-52826277)
chr1 (24-81)||(27732274-27732331)
chr1 (102-147)||(41563088-41563133)
chr1 (55-95)||(10256807-10256847)
[»] chr8 (12 HSPs)
chr8 (24-93)||(40372323-40372392)
chr8 (36-95)||(43295962-43296021)
chr8 (45-95)||(39910480-39910530)
chr8 (408-472)||(18337200-18337265)
chr8 (102-156)||(34540756-34540810)
chr8 (102-156)||(43295979-43296033)
chr8 (103-156)||(43295883-43295936)
chr8 (102-145)||(40372253-40372296)
chr8 (102-149)||(41789343-41789390)
chr8 (35-81)||(40372253-40372299)
chr8 (33-95)||(41789345-41789407)
chr8 (102-147)||(40372338-40372383)
[»] scaffold0263 (2 HSPs)
scaffold0263 (33-93)||(19869-19929)
scaffold0263 (33-95)||(19797-19859)
[»] scaffold1266 (3 HSPs)
scaffold1266 (24-95)||(204-275)
scaffold1266 (36-93)||(137-194)
scaffold1266 (102-149)||(221-268)
[»] chr6 (10 HSPs)
chr6 (23-81)||(3673860-3673918)
chr6 (102-156)||(3673863-3673917)
chr6 (33-96)||(17182546-17182609)
chr6 (33-95)||(7358934-7358995)
chr6 (102-147)||(17182546-17182591)
chr6 (18-94)||(33122930-33123006)
chr6 (33-95)||(17182616-17182678)
chr6 (102-156)||(7358855-7358909)
chr6 (102-148)||(7358951-7358996)
chr6 (102-156)||(34202977-34203031)
[»] chr5 (15 HSPs)
chr5 (102-156)||(6271918-6271972)
chr5 (33-95)||(6279414-6279476)
chr5 (102-156)||(19216281-19216335)
chr5 (102-156)||(19216377-19216431)
chr5 (102-156)||(24089037-24089091)
chr5 (36-80)||(22012598-22012642)
chr5 (102-153)||(6279501-6279551)
chr5 (35-94)||(19216292-19216351)
chr5 (34-81)||(19216374-19216421)
chr5 (102-156)||(884873-884927)
chr5 (102-156)||(884969-885023)
chr5 (23-81)||(35099586-35099644)
chr5 (33-94)||(6279485-6279545)
chr5 (24-81)||(16052636-16052693)
chr5 (34-94)||(24089047-24089107)
[»] chr7 (6 HSPs)
chr7 (33-95)||(8269934-8269995)
chr7 (40-153)||(13040692-13040806)
chr7 (24-95)||(27115309-27115380)
chr7 (102-157)||(30838354-30838409)
chr7 (36-94)||(33628771-33628829)
chr7 (35-81)||(46773921-46773967)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 348
Target Start/End: Original strand, 14593839 - 14594180
Alignment:
Q  9 gaaatgaagatgttgtacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtctggtctatattgaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||     ||||||||||    
T  14593839 gaaatgaagatgttgtacttcctgcggtctcaaatgtaagcaatttttcactttttaggtgcattcaataaatattgcatgtggt-----ctatattgaa 14593933  T
Q  109 tgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagtagaagttaacctttattgagcaaagaacactcaagtatattacccaaaaatat 208  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14593934 tgaacctaaaaagtgaaaagttgtttgcatttgagaccagagggagtagaagttaacctttattgagcaaagaacactcaagtatattacccaaaaatat 14594033  T
Q  209 tacccnnnnnnntgtgtagtaagttttgggtgcaaactccacttcaggggcatgattggtaattataaaagataaaaggacatagaag-------tcagt 301  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  14594034 tacccaaaaaaatgtgtagtaagttttgggtgcaaactccacttcaggggcatgattggtaattataaaagataaaaggacatagaagtcagtactcagt 14594133  T
Q  302 atagaagggagaacttcaaggacatgttttctccaatttgactgaag 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14594134 atagaagggagaacttcaaggacatgttttctccaatttgactgaag 14594180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 387 - 569
Target Start/End: Original strand, 14594219 - 14594400
Alignment:
Q  387 cttgttgaaaattgtatcgttttccttcccttgcaatcctccttatttttactactgccacatctaaaataagattgacaaaacaacccaaatttattgt 486  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14594219 cttgttgaaaattgtatcgttttccttcccttgcaatcctctttatttttactactgccacatctaaaataagattgacaaaacaacccaaatttattgt 14594318  T
Q  487 ttgtattgctatttgacaacgnnnnnnnnaatgataaatgtcaatatgttagttatgttaatattttgtttcttgtcacatct 569  Q
    |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14594319 ttgtattgctatttgacaacg-tttttttaatgataaatgtcaatatgttagttatgttaatattttgtttcttgtcacatct 14594400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 39009830 - 39009957
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtctggtctatattgaatgaacctaaaaagtg 123  Q
    |||| ||| ||||||||||||||||||| ||||||||||| || | ||||||||||||  ||||||||||     ||||||||||||||| |||||||||    
T  39009830 tactccctccggtctcaaatgtaagcaacttttcacttttgaggttcattcaataaatgatgtatgtggt-----ctatattgaatgaacttaaaaagtg 39009924  T
Q  124 aaaagttgtttgcatttgagaccggagggagta 156  Q
    |||||||| || |||||||||||||||||||||    
T  39009925 aaaagttgcttacatttgagaccggagggagta 39009957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 53739534 - 53739589
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagtag 157  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  53739534 tattgaatgaacctaaaaagtgaaaagttgcttacatttgagaccggagggagtag 53739589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 39009884 - 39009829
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagtag 157  Q
    |||||||||||||| ||||||||||||||| || ||||||||||||||||||||||    
T  39009884 tattgaatgaacctcaaaagtgaaaagttgcttacatttgagaccggagggagtag 39009829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 45502802 - 45502856
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||    
T  45502802 tattgaatgaacctaaaaaataaaaagttgtttacatttgagaccggagggagta 45502856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 53739492 - 53739438
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    ||||||||||||||||||||| |||||||| || |||||||||||||||||||||    
T  53739492 tattgaatgaacctaaaaagtaaaaagttgcttacatttgagaccggagggagta 53739438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 30675133 - 30675079
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||| ||||||||||||||||||||||||  || |||||||||||||||||||||    
T  30675133 tattaaatgaacctaaaaagtgaaaagtttcttacatttgagaccggagggagta 30675079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 45502766 - 45502712
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||||||| ||||    
T  45502766 tattgaatgaacctaaaaaataaaaagttgtttacatttgagaccggaggaagta 45502712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 53739588 - 53739518
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtc 94  Q
    |||| ||| ||||||||||||||||||| |||||||||||||| | ||||||||||||  || ||||||||    
T  53739588 tactccctccggtctcaaatgtaagcaacttttcactttttaggttcattcaataaatgatgcatgtggtc 53739518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 36458679 - 36458624
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagtag 157  Q
    ||||||||||||||||||||| ||||||||||| | ||||||| ||||| ||||||    
T  36458679 tattgaatgaacctaaaaagtaaaaagttgtttacttttgagatcggagagagtag 36458624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 45502712 - 45502783
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    |||||||| ||||||||||||||| ||| |||| | ||||||| | ||||||||||||  ||||||||||||    
T  45502712 tacttcctccggtctcaaatgtaaacaactttttattttttaggttcattcaataaatgatgtatgtggtct 45502783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 53739438 - 53739509
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    |||| ||| ||||||||||||||||||| |||| ||||||||| | ||||||||||||  |||||| |||||    
T  53739438 tactccctccggtctcaaatgtaagcaactttttactttttaggttcattcaataaatgatgtatgcggtct 53739509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 46890463 - 46890401
Alignment:
Q  33 cggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    ||||||||||| ||||||| ||||||||||||| ||  |||||||||||  ||||||||||||    
T  46890463 cggtctcaaatctaagcaacttttcactttttaaatttattcaataaatgatgtatgtggtct 46890401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 48287991 - 48288049
Alignment:
Q  33 cggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtg 91  Q
    |||||||||||||||| ||||||| ||||||||| | ||||||||||||  ||||||||    
T  48287991 cggtctcaaatgtaagaaattttttactttttaggttcattcaataaatgatgtatgtg 48288049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 45502857 - 45502784
Alignment:
Q  23 gtacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtctg 96  Q
    ||||| ||| ||||||||||||||| ||| |||| | ||||||| | ||||||||||||  |||||||||||||    
T  45502857 gtactccctccggtctcaaatgtaaacaactttttattttttaggttcattcaataaatgatgtatgtggtctg 45502784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 35504808 - 35504855
Alignment:
Q  33 cggtctcaaatgtaagcaatttttcactttttagatgcattcaataaat 81  Q
    |||||||||||||||||||||||| ||||||||||| |||| |||||||    
T  35504808 cggtctcaaatgtaagcaattttt-actttttagattcattaaataaat 35504855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 43493900 - 43493936
Alignment:
Q  115 taaaaagtgaaaagttgtttgcatttgagaccggagg 151  Q
    |||||||||||||||||||| ||||||||||||||||    
T  43493900 taaaaagtgaaaagttgtttacatttgagaccggagg 43493936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 35504936 - 35504893
Alignment:
Q  22 tgtacttcctgcggtctcaaatgtaagcaatttttcacttttta 65  Q
    |||||| ||| |||||||||||||||| ||||||||||||||||    
T  35504936 tgtactccctccggtctcaaatgtaagaaatttttcacttttta 35504893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 14593908 - 14593854
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    ||||||||| |||||||||||||||| ||| || |||||||||||| ||| ||||    
T  14593908 tattgaatgcacctaaaaagtgaaaaattgcttacatttgagaccgcaggaagta 14593854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 35504880 - 35504934
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||| ||||||| ||||||||||||| ||  || |||||||||||||||||||||    
T  35504880 tatttaatgaacttaaaaagtgaaaaatttcttacatttgagaccggagggagta 35504934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 39009957 - 39009903
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaata 78  Q
    |||| ||| ||||||||||||||||||| |||||||||||||  | |||||||||    
T  39009957 tactccctccggtctcaaatgtaagcaacttttcactttttaagttcattcaata 39009903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 43493796 - 43493858
Alignment:
Q  33 cggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    |||||| ||||||||| | ||||||| ||||||||| |||| |||||||  ||||||||||||    
T  43493796 cggtcttaaatgtaagaattttttcaatttttagattcatttaataaatgatgtatgtggtct 43493858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 30675079 - 30675136
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaat 81  Q
    |||| ||| |||||||||||||||| || |||||||||||||| | |||| |||||||    
T  30675079 tactccctccggtctcaaatgtaagaaacttttcactttttaggttcatttaataaat 30675136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 36458765 - 36458709
Alignment:
Q  33 cggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgt 90  Q
    |||||||||||||||||||||||| | |||| |||| ||||||||||||  |||||||    
T  36458765 cggtctcaaatgtaagcaattttttatttttaagat-cattcaataaatgatgtatgt 36458709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 118; Significance: 6e-60; HSPs: 4)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 42600 - 42448
Alignment:
Q  9 gaaatgaagatgttgtacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtctggtctatattgaa 108  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     ||||||||||||    
T  42600 gaaatgaagatgttgtacttccttcggtctcaaatgtaagcaatttttcactttttaggtgcattcaataaatattgtatgtg-----gtctatattgaa 42506  T
Q  109 tgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagtagaagttaacc 166  Q
    ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||    
T  42505 tgaacctaaaatgtgaaaagttgcttgcatttgagaccggatggagtagaagttaacc 42448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 400 - 484
Target Start/End: Complemental strand, 42221 - 42137
Alignment:
Q  400 gtatcgttttccttcccttgcaatcctccttatttttactactgccacatctaaaataagattgacaaaacaacccaaatttatt 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42221 gtatcgttttccttcccttgcaatcctccttatttttactactgccacatctaaaataagattgacaaaacaatccaaatttatt 42137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 221 - 296
Target Start/End: Complemental strand, 42439 - 42364
Alignment:
Q  221 tgtgtagtaagttttgggtgcaaactccacttcaggggcatgattggtaattataaaagataaaaggacatagaag 296  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42439 tgtgtagcaagttttgggtgcaaactccacttcaggggcatgattggtaattataaaagataaaaggacatagaag 42364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 42531 - 42585
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    ||||||||| |||||||||||||||| ||| || |||||||||||| ||| ||||    
T  42531 tattgaatgcacctaaaaagtgaaaaattgcttacatttgagaccgaaggaagta 42585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 35820523 - 35820648
Alignment:
Q  27 ttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtc--------tggtctatattgaatgaacctaaa 118  Q
    ||||| ||||||||||||||||||| |||||||||||||| | |||||||||||   |||||||||||        |  ||| |||||||||||||||||    
T  35820523 ttcctccggtctcaaatgtaagcaacttttcactttttaggttcattcaataaaggatgtatgtggtcgccacatatattctttattgaatgaacctaaa 35820622  T
Q  119 aagtgaaaagttgtttgcatttgaga 144  Q
    ||||||||||||| || |||||||||    
T  35820623 aagtgaaaagttgcttacatttgaga 35820648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 3435241 - 3435295
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  3435241 tattgaatgaacctaaaaagtgaaaagttgcttacatttgagaccggagggagta 3435295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 41554140 - 41554069
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    |||| ||| |||||||||||||||||||||||||||||||||| | ||||||||||||  ||||||| ||||    
T  41554140 tactcccttcggtctcaaatgtaagcaatttttcactttttaggttcattcaataaatcatgtatgtagtct 41554069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 35820574 - 35820525
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagg 151  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||    
T  35820574 tattgaatgaacctaaaaagtgaaaagttgcttacatttgagaccggagg 35820525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 3435156 - 3435216
Alignment:
Q  35 gtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    ||||||||||||||||| ||||||||||| || | ||||||||||||| ||||||||||||    
T  3435156 gtctcaaatgtaagcaacttttcacttttgaggttcattcaataaataatgtatgtggtct 3435216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 3435199 - 3435144
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagtag 157  Q
    |||||||||||||| ||||||||||||||| || |||||||||| |||||||||||    
T  3435199 tattgaatgaacctcaaaagtgaaaagttgcttacatttgagactggagggagtag 3435144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 3435295 - 3435225
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtc 94  Q
    |||| ||| ||||||||||||||||||| |||||||||||||| | ||||||||||||  || ||||||||    
T  3435295 tactccctccggtctcaaatgtaagcaacttttcactttttaggttcattcaataaattatgaatgtggtc 3435225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 41554086 - 41554140
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||||||||||||||||||||||||| ||| || |||||||||||| ||||||||    
T  41554086 tattgaatgaacctaaaaagtgaaaaattgcttacatttgagaccgaagggagta 41554140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 35820648 - 35820592
Alignment:
Q  36 tctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtgg 92  Q
    |||||||||||||||| |||||||||||||| | ||||||||||| | | |||||||    
T  35820648 tctcaaatgtaagcaacttttcactttttaggttcattcaataaagaatatatgtgg 35820592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 41553990 - 41554061
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    |||| ||| |||||| |||||||||||| |||||||||||||||| || | |||| ||  ||||||||||||    
T  41553990 tactccctccggtctaaaatgtaagcaaattttcactttttagattcactaaatagatgatgtatgtggtct 41554061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 25124757 - 25124703
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||||||| |||||||||||||||||| | ||| ||||||| || ||||||||||    
T  25124757 tattgaataaacctaaaaagtgaaaagctctttacatttgaaactggagggagta 25124703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 42183210 - 42183156
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||||||||||| |||||||| |||| ||| || ||||||| |||||||||||||    
T  42183210 tattgaatgaacttaaaaagtaaaaaattgattacatttgaaaccggagggagta 42183156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 33118290 - 33118339
Alignment:
Q  103 attgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggaggg 152  Q
    ||||| |||||||||||||| |||||||| || |||||||||| ||||||    
T  33118290 attgattgaacctaaaaagtaaaaagttgcttacatttgagactggaggg 33118339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 42183156 - 42183225
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggt 93  Q
    |||| ||| |||| |||||||||| |||||||| ||||||||  | ||||||||||||| |||| |||||    
T  42183156 tactccctccggtttcaaatgtaatcaattttttactttttaagttcattcaataaataatgtacgtggt 42183225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 33118332 - 33118272
Alignment:
Q  35 gtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    ||||||||||||||||| |||| ||||||||| | || ||||| |||  ||||||||||||    
T  33118332 gtctcaaatgtaagcaactttttactttttaggttcaatcaattaatgatgtatgtggtct 33118272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 35005169 - 35005129
Alignment:
Q  55 ttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    |||| ||||||||| ||||||||||||| ||||||||||||    
T  35005169 ttcaatttttagattcattcaataaataatgtatgtggtct 35005129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 41554037 - 41553989
Alignment:
Q  109 tgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagtag 157  Q
    |||| |||||||||||||| ||| || ||||| ||||||||||||||||    
T  41554037 tgaatctaaaaagtgaaaatttgcttacattttagaccggagggagtag 41553989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 23962322 - 23962268
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  23962322 tattgaatgaacctaaaaagtgaaaagttgcttacatttgagaccggagggagta 23962268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 25312553 - 25312607
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  25312553 tattgaatgaacctaaaaagtaaaaagttgcttgcatttgagaccggagggagta 25312607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 23962267 - 23962338
Alignment:
Q  23 gtacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtc 94  Q
    ||||| ||| ||||||||||||||||||| |||||||||||||| | ||||||||||| | |||||||||||    
T  23962267 gtactccctccggtctcaaatgtaagcaacttttcactttttaggttcattcaataaacaatgtatgtggtc 23962338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 25312513 - 25312457
Alignment:
Q  100 tatattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||||||||||||| ||||||||||||| ||| || |||||||||||||||||||||    
T  25312513 tatattgaatgaacataaaaagtgaaaaattgcttacatttgagaccggagggagta 25312457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 25312457 - 25312527
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtc 94  Q
    |||| ||| |||||||||||||||||||||||||||||||||  | ||||||||| ||  |||||||||||    
T  25312457 tactccctccggtctcaaatgtaagcaatttttcactttttatgttcattcaatatatgatgtatgtggtc 25312527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 23962364 - 23962418
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    ||||||||||| ||||||||| |||||||| || || ||||||||||||||||||    
T  23962364 tattgaatgaatctaaaaagtaaaaagttgcttacaattgagaccggagggagta 23962418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 23962418 - 23962361
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaat 81  Q
    |||| ||| ||||||||| ||||||||| |||| ||||||||||| ||||||||||||    
T  23962418 tactccctccggtctcaattgtaagcaactttttactttttagattcattcaataaat 23962361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 73
Target Start/End: Original strand, 1204458 - 1204497
Alignment:
Q  34 ggtctcaaatgtaagcaatttttcactttttagatgcatt 73  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  1204458 ggtcttaaatgtaagcaatttttcactttttagatacatt 1204497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 25312607 - 25312550
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaat 81  Q
    |||| ||| |||||||||||| |||||| |||| ||||||||| | ||||||||||||    
T  25312607 tactccctccggtctcaaatgcaagcaactttttactttttaggttcattcaataaat 25312550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 43341136 - 43341181
Alignment:
Q  36 tctcaaatgtaagcaatttttcactttttagatgcattcaataaat 81  Q
    ||||||| |||||||| |||| ||||||||||| ||||||||||||    
T  43341136 tctcaaacgtaagcaactttttactttttagattcattcaataaat 43341181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 43341262 - 43341217
Alignment:
Q  36 tctcaaatgtaagcaatttttcactttttagatgcattcaataaat 81  Q
    |||||||||||||||| |||| ||||||||||| |||| |||||||    
T  43341262 tctcaaatgtaagcaactttttactttttagattcatttaataaat 43341217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 133283 - 133211
Alignment:
Q  23 gtacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| | |||| |||||| | ||||||||||||    
T  133283 gtactccctccggtctcaaatgtaagcaatttttcactttttaggttcattgaataaacaatgtatgtggtct 133211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 133228 - 133282
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||| ||||||||||||||||||||| ||| || |||||||||||||||||||||    
T  133228 tattcaatgaacctaaaaagtgaaaaattgcttacatttgagaccggagggagta 133282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 29070762 - 29070692
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtc 94  Q
    |||| ||| ||||||||||||||||||||||||||| |||||| | ||||||||||||  |||||||||||    
T  29070762 tactccctccggtctcaaatgtaagcaatttttcacattttaggttcattcaataaatgatgtatgtggtc 29070692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 11322493 - 11322436
Alignment:
Q  36 tctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggt 93  Q
    ||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||    
T  11322493 tctcaaatgtaagaaattttttactttttaggttcattcaataaatattgtatgtggt 11322436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 11480514 - 11480457
Alignment:
Q  36 tctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggt 93  Q
    ||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||    
T  11480514 tctcaaatgtaagaaattttttactttttaggttcattcaataaatattgtatgtggt 11480457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 47507701 - 47507645
Alignment:
Q  35 gtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtg 91  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  47507701 gtcttaaatgtaagcaatttttcactttttagattcattcaataaattatgtatgtg 47507645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 29070666 - 29070612
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||||||||||| |||||||| |||||||| || |||||||||||||||||||||    
T  29070666 tattgaatgaacataaaaagtaaaaagttgcttacatttgagaccggagggagta 29070612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 29070708 - 29070762
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||||||||||||||||| ||||||| ||| || |||||||||||||||||||||    
T  29070708 tattgaatgaacctaaaatgtgaaaaattgcttacatttgagaccggagggagta 29070762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 41563046 - 41562992
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    ||||||||||||||||||| |||||||||  || |||||||||||||||||||||    
T  41563046 tattgaatgaacctaaaaaatgaaaagtttcttacatttgagaccggagggagta 41562992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 47507571 - 47507629
Alignment:
Q  36 tctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtc 94  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||  ||||| |||||    
T  47507571 tctcaaatgtaagcaatttttcactttttagattcatttaataaattatgtatatggtc 47507629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 29070611 - 29070683
Alignment:
Q  23 gtacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    ||||| ||| ||||||||||||||||||| |||| ||||||||  | ||||||||||||  ||||||||||||    
T  29070611 gtactccctccggtctcaaatgtaagcaactttttactttttatgttcattcaataaatgatgtatgtggtct 29070683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 34184483 - 34184436
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccgga 149  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||||||    
T  34184483 tattgaataaacctaaaaagtgaaaagttttttacatttgagaccgga 34184436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 34500215 - 34500165
Alignment:
Q  45 taagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    |||||||||||||||||||||||| |||| |||||||| || |||||||||    
T  34500215 taagcaatttttcactttttagattcattgaataaataatgcatgtggtct 34500165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 41562989 - 41563058
Alignment:
Q  21 ttgtacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgt 90  Q
    ||||||| ||| |||||||||||||||| || |||||| ||||||| | ||||||||||||  |||||||    
T  41562989 ttgtactccctccggtctcaaatgtaagaaacttttcattttttaggttcattcaataaatgatgtatgt 41563058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 41563142 - 41563073
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggt 93  Q
    |||||| | |||||||||||||||| || |||||||||||||| | || |||||||||  ||||||||||    
T  41563142 tacttcattcggtctcaaatgtaagaaacttttcactttttaggttcactcaataaatgatgtatgtggt 41563073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 49317104 - 49317047
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaat 81  Q
    |||||||| || ||||||||||||| ||||||  ||||||||||| ||||||||||||    
T  49317104 tacttcctccgatctcaaatgtaagaaattttgtactttttagattcattcaataaat 49317047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 14442416 - 14442463
Alignment:
Q  34 ggtctcaaatgtaagcaatttttcactttttagatgcattcaataaat 81  Q
    ||||||||||||||| || ||||||| |||||||| ||||||||||||    
T  14442416 ggtctcaaatgtaagaaacttttcaccttttagattcattcaataaat 14442463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 49586296 - 49586241
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaa-gttgtttgcatttgagaccggagggagta 156  Q
    |||| |||||||||||||| |||||| |||| || |||||||||||||||||||||    
T  49586296 tattaaatgaacctaaaaaatgaaaaagttgcttacatttgagaccggagggagta 49586241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 14442460 - 14442406
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    ||||||||||| |||||| ||||||||||  || ||||||||||| |||||||||    
T  14442460 tattgaatgaatctaaaaggtgaaaagtttcttacatttgagaccagagggagta 14442406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 27732277 - 27732331
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||| ||||||||||||||||||||||||| ||  | ||||||||||||| ||||    
T  27732277 tattcaatgaacctaaaaagtgaaaagttgcttataattgagaccggaggaagta 27732331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 34184438 - 34184500
Alignment:
Q  33 cggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    |||||||||||||||  || |||||||||||||| |  |||||||||||| ||||||| ||||    
T  34184438 cggtctcaaatgtaaaaaacttttcactttttaggtttattcaataaataatgtatgtagtct 34184500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 49586338 - 49586392
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||||||||||||||||||||||||||||  ||  |||||||| |||| ||||||    
T  49586338 tattgaatgaacctaaaaagtgaaaagttacttatatttgagatcggaaggagta 49586392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 52826223 - 52826277
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    ||||||||||||| ||||| | |||||||  || |||||||||||||||||||||    
T  52826223 tattgaatgaaccaaaaaaataaaaagtttcttacatttgagaccggagggagta 52826277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 27732331 - 27732274
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaat 81  Q
    |||||||| ||||||||| | ||||||| |||||||||||||| | |||| |||||||    
T  27732331 tacttcctccggtctcaattataagcaacttttcactttttaggttcattgaataaat 27732274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 41563088 - 41563133
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccg 147  Q
    |||||| ||||||||||||||||||||||  || ||||||||||||    
T  41563088 tattgagtgaacctaaaaagtgaaaagtttcttacatttgagaccg 41563133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 10256807 - 10256847
Alignment:
Q  55 ttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    |||||||||||||| ||||||||||||  ||||||||||||    
T  10256807 ttcactttttagattcattcaataaatgatgtatgtggtct 10256847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 40372392 - 40372323
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggt 93  Q
    |||||||  |||||||||||||||| ||||||||||||||||| | ||||||||||||  ||||||||||    
T  40372392 tacttccatcggtctcaaatgtaagaaatttttcactttttaggttcattcaataaattatgtatgtggt 40372323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 43296021 - 43295962
Alignment:
Q  36 tctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    |||||||||||||||| ||||||||||||| || ||||||||||||  ||||||||||||    
T  43296021 tctcaaatgtaagcaacttttcactttttaaattcattcaataaatgatgtatgtggtct 43295962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 39910480 - 39910530
Alignment:
Q  45 taagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||||||||    
T  39910480 taagcaatttttcactttttagattcattgaataaataatgtatgtggtct 39910530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 472
Target Start/End: Complemental strand, 18337265 - 18337200
Alignment:
Q  408 ttccttcccttgcaatcctccttat-ttttactactgccacatctaaaataagattgacaaaacaa 472  Q
    ||||||||||||||||||||||||| |||| ||||||| || |||||||| || ||||||||||||    
T  18337265 ttccttcccttgcaatcctccttatttttttctactgctacgtctaaaatcaggttgacaaaacaa 18337200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 34540756 - 34540810
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||| ||||||||| |||||| |||||||| || |||||||||||||||||||||    
T  34540756 tattaaatgaacctcaaaagtaaaaagttgcttccatttgagaccggagggagta 34540810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 43295979 - 43296033
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||||||||||  ||||||||||||||||| || ||||||||| |||||||||||    
T  43295979 tattgaatgaatttaaaaagtgaaaagttgcttacatttgagatcggagggagta 43296033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 43295936 - 43295883
Alignment:
Q  103 attgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||||||||| |||||| |||||||||||||| |||||  ||||||||||||||    
T  43295936 attgaatgaatctaaaatgtgaaaagttgtttacatttacgaccggagggagta 43295883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 40372296 - 40372253
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagac 145  Q
    |||| ||||||||||||||||||||||||| || ||||||||||    
T  40372296 tattaaatgaacctaaaaagtgaaaagttgcttacatttgagac 40372253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 41789390 - 41789343
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccgga 149  Q
    |||||||||||| |||||||| |||||||| || ||||||||||||||    
T  41789390 tattgaatgaacttaaaaagtaaaaagttgcttacatttgagaccgga 41789343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 40372253 - 40372299
Alignment:
Q  35 gtctcaaatgtaagcaatttttcactttttagatgcattcaataaat 81  Q
    ||||||||||||||||| |||||||||||||| | |||| |||||||    
T  40372253 gtctcaaatgtaagcaacttttcactttttaggttcatttaataaat 40372299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 41789345 - 41789407
Alignment:
Q  33 cggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    ||||||||||||||||||| |||| ||||||||  | ||||||||||| | | ||||||||||    
T  41789345 cggtctcaaatgtaagcaactttttactttttaagttcattcaataaacaatatatgtggtct 41789407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 40372338 - 40372383
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccg 147  Q
    |||||||||||||||||||||||||| ||  || ||||||||||||    
T  40372338 tattgaatgaacctaaaaagtgaaaaatttcttacatttgagaccg 40372383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 19929 - 19869
Alignment:
Q  33 cggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggt 93  Q
    ||||||||||||||| |||||||||||||||||||| |||| |||||||  ||||||||||    
T  19929 cggtctcaaatgtaaccaatttttcactttttagattcatttaataaattatgtatgtggt 19869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 19797 - 19859
Alignment:
Q  33 cggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    ||||| ||||| ||| ||| |||||||||||||||| |||| |||||||  ||||||||||||    
T  19797 cggtcacaaatctaaccaacttttcactttttagattcattaaataaatgatgtatgtggtct 19859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 275 - 204
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    |||||| | ||||| ||||||||| ||| |||||||||||||||| ||||||||||||  ||||||||||||    
T  275 tacttcatccggtcacaaatgtaaccaacttttcactttttagattcattcaataaatgatgtatgtggtct 204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 137 - 194
Alignment:
Q  36 tctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggt 93  Q
    |||||||||||| |||||||||||||||||||| |||| |||||||  ||||||||||    
T  137 tctcaaatgtaaccaatttttcactttttagattcatttaataaattatgtatgtggt 194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 221 - 268
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccgga 149  Q
    ||||||||||| |||||||||||||||||| || |||||| |||||||    
T  221 tattgaatgaatctaaaaagtgaaaagttggttacatttgtgaccgga 268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 3673918 - 3673860
Alignment:
Q  23 gtacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaat 81  Q
    ||||| ||| ||||||||||||||||| | |||||||||||||||| ||||||||||||    
T  3673918 gtactccctccggtctcaaatgtaagcgacttttcactttttagattcattcaataaat 3673860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 3673863 - 3673917
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    ||||||||||| |||||||||||||||| | || |||||||||||||||||||||    
T  3673863 tattgaatgaatctaaaaagtgaaaagtcgcttacatttgagaccggagggagta 3673917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 17182546 - 17182609
Alignment:
Q  33 cggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtctg 96  Q
    |||||||||||||||| || |||||||||||||| | ||||||||||||  |||| ||||||||    
T  17182546 cggtctcaaatgtaagtaacttttcactttttaggttcattcaataaatgatgtacgtggtctg 17182609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 7358995 - 7358934
Alignment:
Q  33 cggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    ||||||||||||||||||| |||||||||||||| | |||||||||| |  ||||||||||||    
T  7358995 cggtctcaaatgtaagcaacttttcactttttag-ttcattcaataattgatgtatgtggtct 7358934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 17182591 - 17182546
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccg 147  Q
    |||||||||||||||||||||||||||||  || ||||||||||||    
T  17182591 tattgaatgaacctaaaaagtgaaaagttacttacatttgagaccg 17182546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 33123006 - 33122930
Alignment:
Q  18 atgttgtacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtc 94  Q
    ||||| |||| ||| || ||| ||||||||| ||||||||||||||||||| |||| |||||||  || ||||||||    
T  33123006 atgttatactccctccgatcttaaatgtaagaaatttttcactttttagattcatttaataaatgatgcatgtggtc 33122930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 17182678 - 17182616
Alignment:
Q  33 cggtctcaaatgtaagcaatttttcact-ttttagatgcattcaataaatattgtatgtggtct 95  Q
    |||||| |||||||||||| |||||||| |||||||| |||| |||||||| ||||||||||||    
T  17182678 cggtctgaaatgtaagcaacttttcacttttttagattcatttaataaata-tgtatgtggtct 17182616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 7358909 - 7358855
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    ||||||||||||| |||||||||||||||  || ||||||| ||| |||||||||    
T  7358909 tattgaatgaaccaaaaaagtgaaaagttacttacatttgataccagagggagta 7358855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 7358951 - 7358996
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccgg 148  Q
    |||||||||||| ||||||||||||||||| || |||||||||||||    
T  7358951 tattgaatgaac-taaaaagtgaaaagttgcttacatttgagaccgg 7358996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 34203031 - 34202977
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    ||||||||||||||||||||| ||||| |||||  ||||||||||| | ||||||    
T  34203031 tattgaatgaacctaaaaagtaaaaagctgtttaaatttgagaccgaaaggagta 34202977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 6271972 - 6271918
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    ||||||||||||||| ||| ||||||||| ||| |||||||||||||||||||||    
T  6271972 tattgaatgaacctacaaaatgaaaagttttttacatttgagaccggagggagta 6271918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 6279414 - 6279476
Alignment:
Q  33 cggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    |||| ||||||||||||||||||||| ||||||| | |||||| |||||  ||||||||||||    
T  6279414 cggtttcaaatgtaagcaatttttcaatttttaggttcattcactaaatgatgtatgtggtct 6279476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 19216335 - 19216281
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    ||||||||||||||||||| |||||||||| || |||||||||| || |||||||    
T  19216335 tattgaatgaacctaaaaaatgaaaagttgcttacatttgagactggggggagta 19216281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 19216377 - 19216431
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||||||| || |||||||||||||||||| || ||||||||||| |||||||||    
T  19216377 tattgaataaaactaaaaagtgaaaagttgcttacatttgagaccagagggagta 19216431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 24089091 - 24089037
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    ||||||||||||||||||||| |||||||||||  |||||||||| || ||||||    
T  24089091 tattgaatgaacctaaaaagtaaaaagttgtttatatttgagaccagatggagta 24089037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 22012598 - 22012642
Alignment:
Q  36 tctcaaatgtaagcaatttttcactttttagatgcattcaataaa 80  Q
    ||||||||||||| || |||||||||||||||| |||||||||||    
T  22012598 tctcaaatgtaagaaacttttcactttttagattcattcaataaa 22012642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 6279501 - 6279551
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggaggga 153  Q
    |||||||||||  |||||||| ||||||||||| ||||||||||||||||||    
T  6279501 tattgaatgaatataaaaagt-aaaagttgtttacatttgagaccggaggga 6279551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 19216292 - 19216351
Alignment:
Q  35 gtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtc 94  Q
    ||||||||||||||||| |||||| ||||||| | ||||||||||||  || ||||||||    
T  19216292 gtctcaaatgtaagcaacttttcattttttaggttcattcaataaatgatgcatgtggtc 19216351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 19216421 - 19216374
Alignment:
Q  34 ggtctcaaatgtaagcaatttttcactttttagatgcattcaataaat 81  Q
    |||||||||||||||||| |||||||||||||| |  |||||||||||    
T  19216421 ggtctcaaatgtaagcaacttttcactttttagttttattcaataaat 19216374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 884927 - 884873
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||||| ||||||||||||||||||||||  ||  |||||||| |||||||||||    
T  884927 tattgagtgaacctaaaaagtgaaaagtttcttatatttgagatcggagggagta 884873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 884969 - 885023
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagta 156  Q
    |||||||||||| |||||| |||||||||  || ||||||||| |||||||||||    
T  884969 tattgaatgaacttaaaaaatgaaaagtttcttacatttgagatcggagggagta 885023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 35099586 - 35099644
Alignment:
Q  23 gtacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaat 81  Q
    ||||||| | || ||||||||||||| |||||||| |||||||||| |||| |||||||    
T  35099586 gtacttcttccgatctcaaatgtaagtaatttttctctttttagattcatttaataaat 35099644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 6279545 - 6279485
Alignment:
Q  33 cggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtc 94  Q
    ||||||||||||||| ||| |||| |||||||| || ||||||||||||  |||||||||||    
T  6279545 cggtctcaaatgtaaacaactttt-actttttatattcattcaataaattatgtatgtggtc 6279485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 16052636 - 16052693
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaat 81  Q
    |||||| | ||||||||||| ||||||| ||||||||||||| || ||| ||||||||    
T  16052636 tacttcatccggtctcaaatataagcaacttttcactttttaaattcatccaataaat 16052693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 24089047 - 24089107
Alignment:
Q  34 ggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtc 94  Q
    |||||||||| ||| ||| |||| ||||||||| | ||||||||||||  |||||||||||    
T  24089047 ggtctcaaatataaacaactttttactttttaggttcattcaataaatgatgtatgtggtc 24089107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 8269995 - 8269934
Alignment:
Q  33 cggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    ||||||||||||||||||| |||||||||||| | | ||||||||||||| ||||||| ||||    
T  8269995 cggtctcaaatgtaagcaacttttcacttttttg-ttcattcaataaataatgtatgtagtct 8269934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 13040806 - 13040692
Alignment:
Q  40 aaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtctggtc-tatattgaatgaacctaaaaagtgaaaagttgtttgcat 138  Q
    |||||||||||| |||||||||||||  | |||||| |||||| ||||||||||    || | |||||||||||| || ||| ||||||||||| | |||    
T  13040806 aaatgtaagcaacttttcactttttaagttcattcagtaaataatgtatgtggttacatcgtttattgaatgaacttataaaatgaaaagttgtatacat 13040707  T
Q  139 ttgagaccggaggga 153  Q
    || |||||| |||||    
T  13040706 ttaagaccgaaggga 13040692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 27115380 - 27115309
Alignment:
Q  24 tacttcctgcggtctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtct 95  Q
    |||| ||| ||||||||| | |||||||  ||||||||||||||| |||| |||||||  ||||||||||||    
T  27115380 tactccctccggtctcaattataagcaacctttcactttttagattcattgaataaattatgtatgtggtct 27115309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 30838409 - 30838354
Alignment:
Q  102 tattgaatgaacctaaaaagtgaaaagttgtttgcatttgagaccggagggagtag 157  Q
    |||| ||| ||||||||||||||||| ||| || |||||||||||||| |||||||    
T  30838409 tattaaattaacctaaaaagtgaaaatttgattacatttgagaccggatggagtag 30838354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 33628829 - 33628771
Alignment:
Q  36 tctcaaatgtaagcaatttttcactttttagatgcattcaataaatattgtatgtggtc 94  Q
    ||||||||||||  |||||||||| |||||||| |||| |||||||  |||||||||||    
T  33628829 tctcaaatgtaaataatttttcacattttagattcatttaataaattatgtatgtggtc 33628771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 46773921 - 46773967
Alignment:
Q  35 gtctcaaatgtaagcaatttttcactttttagatgcattcaataaat 81  Q
    |||||||||||||||||||||| | ||||||| | ||||||||||||    
T  46773921 gtctcaaatgtaagcaattttttattttttaggttcattcaataaat 46773967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University