View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16628_low_20 (Length: 239)
Name: NF16628_low_20
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16628_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 42001475 - 42001265
Alignment:
| Q |
13 |
caaaggttatatagtaaattttgtatagtagggatttctatttaaaaggtgaaattatagcactcatcaagtttggttgggtattcattgtccaattatg |
112 |
Q |
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| T |
42001475 |
caaaggttatatagtaaattttgtatagtagggatttctatttaaaaggtgaaattgtagcactcatcaagtttagttgggtattcatcgtccaattatg |
42001376 |
T |
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| Q |
113 |
caatatcacgttgtatatttgttttaatttatctaaaaataaaaccaaattttaaataaactttccattttcaaccaagtctagctattataattgaaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42001375 |
caatatcacgttgtatatttgttttaatttatctaaaaataaaaccaaattttaaataaactttccattttcaaccaagtctagctattataatggaaaa |
42001276 |
T |
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| Q |
213 |
gcctatacgtg |
223 |
Q |
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||||||||||| |
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| T |
42001275 |
gcctatacgtg |
42001265 |
T |
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