View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16628_low_21 (Length: 237)
Name: NF16628_low_21
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16628_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8357889 - 8358110
Alignment:
| Q |
1 |
atgacattcgcaataggtacatggaacttcttcaaaaactaacatcaaagagaaggaaaattcaaagaagattaacattgattagtgtttgcaagaaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8357889 |
atgacattcgcaataggtacatggaacttcttcaaaaactaacatcaaagagaaggaaaattcaaagaagattaacattgattagtgtttgcaagaaagt |
8357988 |
T |
|
| Q |
101 |
tggaggaattgctcttattacatcacatgctgctattcttattgctttattagtggtttcttttcatagtgttgttgggttagtggctgcaccaagtatt |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8357989 |
tggaggaattgctcttgttacatcacatgctgctattcttattgctttattagtggtttcttttcatagtgttgttgggttagtggctgcaccaagtatt |
8358088 |
T |
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| Q |
201 |
gtaggtggtttagttggtttgt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
8358089 |
gtaggtggtttagttggtttgt |
8358110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 28593691 - 28593475
Alignment:
| Q |
6 |
attcgcaataggtacatggaacttcttcaaaaactaacatcaaagagaaggaaaattcaaagaagattaacattgattagtgtttgcaagaaagttggag |
105 |
Q |
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|||| |||||||||||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
28593691 |
attcacaataggtacattgaacttcttcatagactaacatcaaagagaaagaaaattcaaagaagattagcattgattagggtttgcaagaaagttggag |
28593592 |
T |
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| Q |
106 |
gaattgctcttattacatcacatgctgctattcttattgctttattagtggtttcttttcatagtgttgttgggttagtggctgcaccaagtattgtagg |
205 |
Q |
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||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
28593591 |
gaattgctcttgttacatcacatggtgccattcttattgctttattagtggtttcttttcatagtgtagtagggttagtggctgcaccaagtattgtagg |
28593492 |
T |
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| Q |
206 |
tggtttagttggtttgt |
222 |
Q |
| |
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| |||| |||||||||| |
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| T |
28593491 |
tagtttggttggtttgt |
28593475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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