View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16628_low_22 (Length: 231)
Name: NF16628_low_22
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16628_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 3684552 - 3684342
Alignment:
| Q |
13 |
agcacagagcagcattcatggcagaagcagaccggtctcaactccatggacttcaccacgggagaataatgaacccaacaatcgtggctactttgactat |
112 |
Q |
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| T |
3684552 |
agcacacagcagcattcatggcagaagcagaccggtctcaactccatggacttcaccacgggagaataatgaacccaacaatcgtggctactatgactat |
3684453 |
T |
|
| Q |
113 |
ggctacatgtaccctaaaaaggtcgttgctgtcacgtgccatggnnnnnnnncctcattctcagcaagttgtccacctcagattcgtcgttacttttgaa |
212 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3684452 |
gggtacatgtaccctaaaaaggtcgttgctatcacgtgccatggaaaaaaaacttcattctcagcaagttgtccacctcagattcgtcgttacttttgaa |
3684353 |
T |
|
| Q |
213 |
aaatgatgatg |
223 |
Q |
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||||| ||||| |
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| T |
3684352 |
aaatggtgatg |
3684342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 108 - 214
Target Start/End: Complemental strand, 3676292 - 3676185
Alignment:
| Q |
108 |
actatggctacatgtaccctaaaaaggtcgttgctgtcacgtgccatggnnnnnnnn-cctcattctcagcaagttgtccacctcagattcgtcgttact |
206 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3676292 |
actatggctacatgtaccctaaaaaggtcgttgttgtcacatgccatggaaaaaacaacctcattctcagcaagttgtccacctcagattcgtcattact |
3676193 |
T |
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| Q |
207 |
tttgaaaa |
214 |
Q |
| |
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|||||||| |
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|
| T |
3676192 |
tttgaaaa |
3676185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 9159140 - 9159180
Alignment:
| Q |
116 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
156 |
Q |
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| T |
9159140 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
9159180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 9171288 - 9171248
Alignment:
| Q |
116 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
156 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
9171288 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
9171248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 7013306 - 7013266
Alignment:
| Q |
116 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
156 |
Q |
| |
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||||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
7013306 |
tacatgtaccctaaaaaggtcgttgttgttacgtgccatgg |
7013266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 7026242 - 7026202
Alignment:
| Q |
116 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
156 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
7026242 |
tacatgtaccctaaaaaggtcgttgttgttacgtgccatgg |
7026202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 7047293 - 7047252
Alignment:
| Q |
115 |
ctacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
156 |
Q |
| |
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|||||||| |||| |||||||| ||||||||||||||||||| |
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|
| T |
7047293 |
ctacatgttccctgaaaaggtcattgctgtcacgtgccatgg |
7047252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 7041950 - 7041918
Alignment:
| Q |
124 |
ccctaaaaaggtcgttgctgtcacgtgccatgg |
156 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
7041950 |
ccctataaaggtcgttgctgtcacgtgccatgg |
7041918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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