View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16628_low_23 (Length: 224)

Name: NF16628_low_23
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16628_low_23
NF16628_low_23
[»] chr2 (12 HSPs)
chr2 (17-206)||(18772144-18772330)
chr2 (17-202)||(18770204-18770392)
chr2 (111-202)||(12168959-12169051)
chr2 (114-202)||(18135861-18135949)
chr2 (111-200)||(15825141-15825230)
chr2 (111-207)||(19050443-19050539)
chr2 (111-202)||(45258165-45258256)
chr2 (111-190)||(45714982-45715061)
chr2 (112-202)||(12127676-12127766)
chr2 (114-202)||(3586353-3586441)
chr2 (114-202)||(36267488-36267576)
chr2 (111-208)||(10923172-10923269)
[»] chr8 (7 HSPs)
chr8 (111-200)||(24576598-24576687)
chr8 (113-191)||(3459508-3459586)
chr8 (156-202)||(6928103-6928149)
chr8 (112-202)||(13764977-13765067)
chr8 (156-202)||(24070884-24070930)
chr8 (111-202)||(26916911-26917002)
chr8 (156-202)||(17698298-17698344)
[»] chr4 (9 HSPs)
chr4 (111-202)||(12683772-12683863)
chr4 (115-202)||(47253268-47253355)
chr4 (113-207)||(15742161-15742255)
chr4 (156-202)||(19809733-19809779)
chr4 (111-202)||(29157089-29157180)
chr4 (124-182)||(16012504-16012562)
chr4 (156-202)||(19643734-19643780)
chr4 (111-179)||(13171066-13171134)
chr4 (111-207)||(15514569-15514665)
[»] chr3 (6 HSPs)
chr3 (108-202)||(12516169-12516263)
chr3 (111-207)||(14860107-14860203)
chr3 (127-202)||(17143762-17143837)
chr3 (156-202)||(28715501-28715547)
chr3 (114-202)||(1770815-1770903)
chr3 (158-202)||(28723787-28723831)
[»] chr6 (13 HSPs)
chr6 (111-207)||(34064182-34064278)
chr6 (108-203)||(18147290-18147385)
chr6 (112-202)||(14080472-14080561)
chr6 (114-202)||(689870-689958)
chr6 (111-202)||(31295548-31295639)
chr6 (156-202)||(14268463-14268509)
chr6 (111-200)||(19331695-19331784)
chr6 (112-207)||(12449591-12449686)
chr6 (156-198)||(3404879-3404921)
chr6 (156-202)||(17380129-17380175)
chr6 (156-202)||(19305496-19305542)
chr6 (111-201)||(22497312-22497402)
chr6 (112-190)||(25008415-25008493)
[»] scaffold0205 (1 HSPs)
scaffold0205 (112-207)||(22874-22969)
[»] chr1 (10 HSPs)
chr1 (115-202)||(5671761-5671848)
chr1 (111-202)||(12177373-12177464)
chr1 (111-202)||(22414762-22414853)
chr1 (114-202)||(33101520-33101608)
chr1 (111-198)||(26977727-26977814)
chr1 (112-203)||(34273075-34273166)
chr1 (111-202)||(52565567-52565658)
chr1 (114-202)||(16030385-16030473)
chr1 (111-207)||(23728828-23728924)
chr1 (111-167)||(48637538-48637594)
[»] scaffold0002 (2 HSPs)
scaffold0002 (130-207)||(121019-121096)
scaffold0002 (111-207)||(379703-379799)
[»] scaffold0505 (1 HSPs)
scaffold0505 (114-202)||(7875-7963)
[»] chr7 (13 HSPs)
chr7 (111-207)||(16987100-16987196)
chr7 (111-207)||(34854230-34854326)
chr7 (111-202)||(39879374-39879465)
chr7 (112-202)||(9867952-9868042)
chr7 (114-202)||(7486535-7486623)
chr7 (115-155)||(12265152-12265192)
chr7 (111-202)||(9135374-9135465)
chr7 (119-189)||(13159368-13159439)
chr7 (124-202)||(21161241-21161319)
chr7 (113-202)||(26762924-26763013)
chr7 (114-207)||(13292131-13292224)
chr7 (111-191)||(12644772-12644852)
chr7 (170-202)||(16203768-16203800)
[»] chr5 (5 HSPs)
chr5 (111-207)||(22865748-22865844)
chr5 (111-190)||(8938899-8938978)
chr5 (111-202)||(25537392-25537483)
chr5 (156-202)||(22903125-22903171)
chr5 (111-202)||(32418499-32418590)
[»] scaffold0140 (1 HSPs)
scaffold0140 (115-202)||(6289-6376)
[»] scaffold0074 (1 HSPs)
scaffold0074 (111-198)||(35240-35327)
[»] scaffold0023 (1 HSPs)
scaffold0023 (115-202)||(95823-95910)
[»] scaffold0263 (1 HSPs)
scaffold0263 (111-207)||(20505-20601)
[»] scaffold0294 (1 HSPs)
scaffold0294 (156-202)||(256-302)


Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 18772144 - 18772330
Alignment:
Q  17 tgaagagcctcaatacaatagatatatctgacc-cacaaacaagatccatgcactgttgtctggctggaaaagttgaagagcctaaaattgttgaaacga 115  Q
    ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18772144 tgaagagcctcaatacaatagatatatctgactgcacaaacaggatccatgcactgttgtctggctggaaaagttgaagagcctaaaattgttgaaacga 18772243  T
Q  116 aaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtg 206  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||    ||||||||||| |||||||| ||||||||||||||    
T  18772244 aaggtgtttgcaggcacgttagcactctgatgctcaaagtagtaatggaact----aagagtgtgtagaaagtgttgtgaaaagtgacgtg 18772330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 18770204 - 18770392
Alignment:
Q  17 tgaagagcctcaatacaatagatatatctgacc-cacaaacaagatccatgcactgttgtctggctggaaaagttgaagagcctaaaattgttgaaacga 115  Q
    |||||| ||||||||||| |||||||||| ||  || ||||| |||||||||| || | |||||||||||||||||| |||||||||||||||| |||||    
T  18770204 tgaagaccctcaatacaacagatatatctaactgcataaacaggatccatgcattgctatctggctggaaaagttgatgagcctaaaattgttggaacga 18770303  T
Q  116 aaggtgcttgc--aggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||| | |  |||||||||| |||||||| ||||||   ||||||| || | |||||||||||||| |||||||| ||||||||||    
T  18770304 aaggtgcctacataggcacgttagcactctgacgctcaagtcagtaatgaaattgagaaagagtgtgtagaaagtgttgtgaaaagtga 18770392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 12168959 - 12169051
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagt-agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||  ||||||||| |||||||||  | |||  |||| ||||||||||||||||||||||||||| |||||||| ||||||||||    
T  12168959 aacgaaaggtgtctgcaggcacattaacactccaacgcttcaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgaaaagtga 12169051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 18135861 - 18135949
Alignment:
Q  114 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||| || ||||||||||  ||||||| ||||||  ||||||||||||| ||||||||||||||  ||||||| | ||||||||    
T  18135861 gaaaggtgcctgtaggcacgttagtactctgacgctcaagttagtaatggaactgagaaagagtgtgtaagaagtgttgtcaaaagtga 18135949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 15825141 - 15825230
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagt 200  Q
    ||||||| |||  ||||||||||||| |||| ||| ||||||    ||||||||||| |||||||||||||| |||||||| ||||||||    
T  15825141 aacgaaatgtgtctgcaggcacgttagcactttgacgctcaagtcggtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagt 15825230  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 19050539 - 19050443
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtgt 207  Q
    ||||||||||  |||||| | ||||| |||||||| ||||||   |||||| |||||||||||||| |||||  ||||||| |||||||||| ||||    
T  19050539 aacgaaaggtatttgcagacccgttagcactctgacgctcaagtcagtaatagaactaagaaagagagtgtaagaagtgttgtgaaaagtgatgtgt 19050443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 45258256 - 45258165
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||| ||  |||||||||||||||||||  | ||||||   ||||||| |||||||||||| |||||  |||||||| ||||||||||    
T  45258256 aacgaaagatgtctgcaggcacgttaacactccaaagctcaagtaagtaatgaaactaagaaagaatgtgtcgaaagtgttgtgaaaagtga 45258165  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 45714982 - 45715061
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgt 190  Q
    |||||||||||| ||||||||||||| |||||  | ||||||   ||||||| |||| |||||||||||||| |||||||    
T  45714982 aacgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgt 45715061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 12127766 - 12127676
Alignment:
Q  112 acgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||| | ||||||||||||| |||||  | ||||||   ||||||| ||||||||| | ||||||| |||||||| ||||||||||    
T  12127766 acgaaaggtacctgcaggcacgttagcactccaacgctcaagtcagtaatgaaactaagaacgtgtgtgtagaaagtgttgtgaaaagtga 12127676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 3586353 - 3586441
Alignment:
Q  114 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||| ||| |||||||||  |||| || ||||||   |||||||||||| ||||| |||| ||| |||||||| ||||||||||    
T  3586353 gaaaggtgcatgccggcacgttaggactccgacgctcaagtcagtaatggaactgagaaaaagtgagtagaaagtgttgtgaaaagtga 3586441  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 36267488 - 36267576
Alignment:
Q  114 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||| |||| ||| ||||||||||  | ||||||   ||||||| |||| |||||||||||||| |||| ||| ||||||||||    
T  36267488 gaaaggtgcctgcatgcatgttaacactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagggttgtgaaaagtga 36267576  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 10923269 - 10923172
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtgtg 208  Q
    |||||||||||  || |||||||||| ||||| ||  |||||   ||| |||||||| | |||||||||||| |||||| | |||||||||| |||||    
T  10923269 aacgaaaggtgtatgtaggcacgttatcactccgacactcaagtcagttatggaacttataaagagtgtgtagaaagtgctgtgaaaagtgaagtgtg 10923172  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 24576687 - 24576598
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagt 200  Q
    |||||||||||| |||||||||||||||||||||| ||||||   |||||||||||||| || |||||||||  ||||||| ||||||||    
T  24576687 aacgaaaggtgcctgcaggcacgttaacactctgacgctcaagtcagtaatggaactaaaaatgagtgtgtaagaagtgttgtgaaaagt 24576598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 3459586 - 3459508
Alignment:
Q  113 cgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgtt 191  Q
    |||||||||| ||||||||||||| ||||| |  ||||||   |||||||||||| || ||||||||||| ||||||||    
T  3459586 cgaaaggtgcctgcaggcacgttagcactccggcgctcaagtcagtaatggaactgagcaagagtgtgtagaaagtgtt 3459508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 6928149 - 6928103
Alignment:
Q  156 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||    
T  6928149 agtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 6928103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 13764977 - 13765067
Alignment:
Q  112 acgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||||  |||||||||||||| ||||  ||| ||||   ||||||| |||| |||||||||||||| |||||||| || |||||||    
T  13764977 acgaaaggtgtctgcaggcacgttaagactccaatgttcaagtgagtaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtga 13765067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 24070884 - 24070930
Alignment:
Q  156 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||    
T  24070884 agtaatggaactaagaaagagtgtgtagaaagtgttgtgagaagtga 24070930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 26917002 - 26916911
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||| |  |||||||||| | | || | ||||||   |||||||||||| ||| |||||||||| |||||||| ||||||||||    
T  26917002 aacgaaaggtgcatttaggcacgttagcgcactaacgctcaagtcagtaatggaactgagagagagtgtgtagaaagtgttgtgaaaagtga 26916911  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 17698344 - 17698298
Alignment:
Q  156 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||  |||||||||||||| |||||||| ||||||||||    
T  17698344 agtaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtga 17698298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 12683772 - 12683863
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||| ||||||||||||| |||||  | ||||||  |||||||| |||| |||||||||||||| |||||||| ||||||||||    
T  12683772 aacgaaaggtgcctgcaggcacgttagcactccaacgctcaagttagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 12683863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 47253268 - 47253355
Alignment:
Q  115 aaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||||||||||| |||| |||||  | ||||||   |||||||||||| |||||||||||||| |||||||| ||||||||||    
T  47253268 aaaggtgcttgcaggcatgttagcactccaacgctcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgttgtgaaaagtga 47253355  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 15742255 - 15742161
Alignment:
Q  113 cgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtgt 207  Q
    |||||||||| ||| ||||||||| |||||| | ||||||   |||||||||||| ||||| ||||||||  ||||||| |||||||||| ||||    
T  15742255 cgaaaggtgcctgctggcacgttagcactcttacgctcaagtcagtaatggaactgagaaaaagtgtgtaagaagtgttgtgaaaagtgatgtgt 15742161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 19809733 - 19809779
Alignment:
Q  156 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||||    
T  19809733 agtaatgaaactaagaaagagtgtgtagaaagtgttgtgaaaagtga 19809779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 29157089 - 29157180
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||| ||||| ||||||  |||||  | ||||||  ||||||||||||| ||||| ||||||||  ||||||| || |||||||    
T  29157089 aacgaaaggtgcatgcagacacgtttgcactccaacgctcaagttagtaatggaactgagaaaaagtgtgtagtaagtgttgtgtaaagtga 29157180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 16012562 - 16012504
Alignment:
Q  124 tgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgta 182  Q
    ||||||||||||||||||| || ||||||   |||||||||||| ||| ||||||||||    
T  16012562 tgcaggcacgttaacactccgacgctcaagtcagtaatggaactgagatagagtgtgta 16012504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 19643734 - 19643780
Alignment:
Q  156 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||| |||||||||||||| ||||| || ||||||||||    
T  19643734 agtaatggaactgagaaagagtgtgtagaaagtcttgtgaaaagtga 19643780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 13171066 - 13171134
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgt 179  Q
    |||||||||||||||||||||||||| |||||  |  |||||   |||||||||||| || ||||||||    
T  13171066 aacgaaaggtgcttgcaggcacgttagcactccaactctcaagtcagtaatggaactgagcaagagtgt 13171134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 15514665 - 15514569
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtgt 207  Q
    |||||| ||||| || |||||||||| |||||  | ||||||   |||||||||||| | ||||||||||||  ||||||| || ||||||| ||||    
T  15514665 aacgaagggtgcctgtaggcacgttagcactccaacgctcaagtcagtaatggaactgaaaaagagtgtgtaagaagtgttgtggaaagtgatgtgt 15514569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 12516169 - 12516263
Alignment:
Q  108 tgaaacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||||||||| ||||| ||||||| ||||| || ||||||  ||||||||||||| ||||||| ||||||  ||||||| ||||||||||    
T  12516169 tgaaacgaaaggtgcctgcagacacgttagcactccgacgctcaagttagtaatggaactgagaaagattgtgtaataagtgttgtgaaaagtga 12516263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 14860203 - 14860107
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtgt 207  Q
    |||||||||||||||||||||| ||| ||||||||| |||||   |||||||||||| ||||| ||| ||||  ||||||| |||||||||| ||||    
T  14860203 aacgaaaggtgcttgcaggcacattagcactctgattctcaactcagtaatggaactgagaaacagtttgtaagaagtgttgtgaaaagtgatgtgt 14860107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 17143837 - 17143762
Alignment:
Q  127 aggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||| ||||| || ||||||   |||||||||||| |||||||||||||| |||||||| ||||||||||    
T  17143837 aggcacgttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 17143762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 28715547 - 28715501
Alignment:
Q  156 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||    
T  28715547 agtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtga 28715501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 1770815 - 1770903
Alignment:
Q  114 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||  |||| ||| ||||  |||| || ||||||  ||||||||||||| || ||||||||||| |||||||| ||||||||||    
T  1770815 gaaaggtgtctgcaagcatgttagtactccgacgctcaagttagtaatggaactgaggaagagtgtgtagaaagtgttgtgaaaagtga 1770903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 28723831 - 28723787
Alignment:
Q  158 taatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||||||||||||||||||| ||| |||| ||||||||||    
T  28723831 taatggaactaagaaagagtgtgtagaaaatgttgtgaaaagtga 28723787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 34064182 - 34064278
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtgt 207  Q
    |||||||||||  |||||||||||||||||| ||| | ||||   ||||||| |||||||||||||||||||  ||||||| |||||||||| ||||    
T  34064182 aacgaaaggtgtgtgcaggcacgttaacactatgacgttcaagtcagtaatgaaactaagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgt 34064278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 18147290 - 18147385
Alignment:
Q  108 tgaaacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgac 203  Q
    ||||||||||||||| || ||| ||||||||||||  | ||||||   | |||||||||  |||||||||||||| |||||||| |||||||||||    
T  18147290 tgaaacgaaaggtgcctgtaggaacgttaacactccaacgctcaagtcactaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtgac 18147385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 14080472 - 14080561
Alignment:
Q  112 acgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||||| | ||||||| ||| |||||||| ||||||  |||||||| |||| ||||||||||||||  ||||||| ||||||||||    
T  14080472 acgaaaggtgcctacaggcacattagcactctgacgctcaagttagtaatg-aactgagaaagagtgtgtagtaagtgttgtgaaaagtga 14080561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 689958 - 689870
Alignment:
Q  114 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||| ||||||| || ||| ||||   ||||||||   |||||||||||| |||||| |||||||||||||||| ||||||||||    
T  689958 gaaaggtgtttgcaggtacattagcactgcaatgctcaagtcagtaatggaactgagaaagtgtgtgtataaagtgttgtgaaaagtga 689870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 31295639 - 31295548
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||| ||| |||||||| |||| ||||  || ||||||   ||||||| |||| ||||||||||||||| ||||||| ||||||||||    
T  31295639 aacgaaagttgcctgcaggcatgttagcacttcgacgctcaagtcagtaatgaaactgagaaagagtgtgtatgaagtgttgtgaaaagtga 31295548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 14268463 - 14268509
Alignment:
Q  156 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||||||| | |||||||| |||||||||||||||||||    
T  14268463 agtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 14268509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 19331784 - 19331695
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagt 200  Q
    ||||||||||||||||||| ||||||  |||| || ||| ||   ||||||||||||||||||||| || || |||||||| || |||||    
T  19331784 aacgaaaggtgcttgcaggtacgttagtactccgacgcttaagtcagtaatggaactaagaaagagagtatagaaagtgttgtgtaaagt 19331695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 12449686 - 12449591
Alignment:
Q  112 acgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtgt 207  Q
    ||||||||||  || |||||||||| |||||||| ||||||   ||||||||| || | ||||||||||||  ||||||| || ||||||| ||||    
T  12449686 acgaaaggtgtctgtaggcacgttagcactctgacgctcaagtcagtaatggagctgaaaaagagtgtgtaagaagtgttgtggaaagtgatgtgt 12449591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 3404921 - 3404879
Alignment:
Q  156 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaa 198  Q
    |||||||||||| |||||||||||||| |||||||| ||||||    
T  3404921 agtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaa 3404879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 17380129 - 17380175
Alignment:
Q  156 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  17380129 agtaatagaactgagaaagagtgtgaataaagtgttgtgaaaagtga 17380175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 19305496 - 19305542
Alignment:
Q  156 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||| || ||||||||||| |||||||| ||||||||||    
T  19305496 agtaatggaactgagtaagagtgtgtagaaagtgttgtgaaaagtga 19305542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 22497402 - 22497312
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtg 201  Q
    |||||||||||||||||| ||||||| ||||| || ||||||   |||||||||||  | | |||| || || |||||||| |||||||||    
T  22497402 aacgaaaggtgcttgcagacacgttagcactccgacgctcaagtcagtaatggaacagaaagagagagtataaaaagtgttgtgaaaagtg 22497312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 25008493 - 25008415
Alignment:
Q  112 acgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgt 190  Q
    ||||||||||| ||  |||||||||||||||  | ||||||   |||||||||| | |||||||||||||| |||||||    
T  25008493 acgaaaggtgcatgtcggcacgttaacactccaacgctcaagtcagtaatggaattgagaaagagtgtgtaaaaagtgt 25008415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 22874 - 22969
Alignment:
Q  112 acgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtgt 207  Q
    ||||||||||| ||| ||||||||| |||||||| ||||||   |||||||||||| |||||  |||||||  ||||||| |||||||||||||||    
T  22874 acgaaaggtgcctgcgggcacgttagcactctgacgctcaagtcagtaatggaactgagaaatcgtgtgtaagaagtgttgtgaaaagtgacgtgt 22969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 5671761 - 5671848
Alignment:
Q  115 aaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||| ||| |||||||||| |||||  | ||||||  ||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  5671761 aaaggtgtttgtaggcacgttagcactccaacgctcaagttagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 5671848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 12177373 - 12177464
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||| | || |||||||| ||||| ||  |||||   |||||||||||| |||||||||||||| |||||||| ||||||||||    
T  12177373 aacgaaaggtgcctacatgcacgttagcactccgacactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 12177464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 22414762 - 22414853
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||||||  |||||||||||| |||||||| ||||||   ||||||| |||| | ||| |||||||| |||||||| ||||||||||    
T  22414762 aacgaaaggtgcccgcaggcacgttagcactctgacgctcaagtcagtaatgaaactgaaaaaaagtgtgtagaaagtgttgtgaaaagtga 22414853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 33101608 - 33101520
Alignment:
Q  114 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||| ||||||||||||| |||||  | ||||||    ||||||||||| ||||| |||||||| |||||||| ||||||||||    
T  33101608 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgtgtagaaagtgttgtgaaaagtga 33101520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 26977727 - 26977814
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaa 198  Q
    |||||||||||| ||||||||||||| |||||  | ||||||   |||||||||||  |||||||||||||| ||||| || ||||||    
T  26977727 aacgaaaggtgcctgcaggcacgttagcactccaacgctcaagtcagtaatggaaccgagaaagagtgtgtagaaagtattgtgaaaa 26977814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 34273075 - 34273166
Alignment:
Q  112 acgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgac 203  Q
    ||||||||| | |||| |||||||| |||||  ||||||||   ||||| |||||| |||||||||||||| |||||||| || ||||||||    
T  34273075 acgaaaggtacctgcaagcacgttagcactccaatgctcaagtcagtaacggaactgagaaagagtgtgtagaaagtgttgtgtaaagtgac 34273166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 52565567 - 52565658
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||| ||||| ||||||| |||||||| ||||||   ||||| |||||| | |||||||| | | |||||||| ||||||||||    
T  52565567 aacgaaaggtgcctgcagacacgttagcactctgacgctcaagtcagtaaaggaactgaaaaagagtgcgcagaaagtgttgtgaaaagtga 52565658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 16030385 - 16030473
Alignment:
Q  114 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||  ||||||||||||| || ||  ||||||||   |||||||||||| |  ||||||||||| |||||||| ||||||||||    
T  16030385 gaaaggtgtctgcaggcacgttatcagtcaaatgctcaagtcagtaatggaactgaataagagtgtgtagaaagtgttgtgaaaagtga 16030473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 23728924 - 23728828
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtgt 207  Q
    |||||||||||  ||||||||||||| || | ||| ||||||   | |||||||| | ||||||||||||||  ||||||| |||||||||| ||||    
T  23728924 aacgaaaggtggatgcaggcacgttagcattatgacgctcaagtcattaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgt 23728828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 48637538 - 48637594
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaact 167  Q
    |||||||||||| ||||||||||| | |||||||| ||||||   ||||||||||||    
T  48637538 aacgaaaggtgcctgcaggcacgtcagcactctgacgctcaagtcagtaatggaact 48637594  T

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Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 121096 - 121019
Alignment:
Q  130 cacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtgt 207  Q
    |||||||  ||||||||||| ||   |||||||||||| ||||||||||||||||||||||| |||||||||| ||||    
T  121096 cacgttagtactctgatgcttaagtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtgatgtgt 121019  T

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Target: scaffold0002; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 379703 - 379799
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtgt 207  Q
    |||||||||||| |  |||||||||| |||| |||  || ||   |||||||||||| ||||||||||||||  ||||||| |||||||||| ||||    
T  379703 aacgaaaggtgcatctaggcacgttagcactttgacactgaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgt 379799  T

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Target: scaffold0505 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 7875 - 7963
Alignment:
Q  114 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||| || |||||||||| |||||| | |||||||  ||||||| || | |||||||||||||| |||||||| ||||||||||    
T  7875 gaaaggtgcatgtaggcacgttagcactctaacgctcaaatcagtaatgcaattgagaaagagtgtgtagaaagtgttgtgaaaagtga 7963  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 16987196 - 16987100
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtgt 207  Q
    |||||||||||| ||| ||||||||| ||||||||  |||||   |||||||||| | ||||||||||||||  ||||||| |||||||||| ||||    
T  16987196 aacgaaaggtgcatgcgggcacgttagcactctgacactcaagccagtaatggaattgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgt 16987100  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 34854230 - 34854326
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtgt 207  Q
    |||||| |||| |||||| ||||||| |||||||| ||||||  |||||||| |||| ||||||||||||||  || |||| |||||||||| ||||    
T  34854230 aacgaacggtgtttgcagacacgttagcactctgacgctcaagttagtaatgaaactgagaaagagtgtgtaagaaatgttgtgaaaagtgatgtgt 34854326  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 39879374 - 39879465
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||| ||||| |||||||||||| | | ||||||   ||||||| |||| |||||||||||||| |||||||| | ||||||||    
T  39879374 aacgaaaggtgcctgcagacacgttaacactttaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgttgtaaaaagtga 39879465  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 9868042 - 9867952
Alignment:
Q  112 acgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||||| |||||| |||||| |||||||| ||||||   |||||||||||| || |||||| |||| |||||||| | ||||||||    
T  9868042 acgaaaggtgcatgcaggaacgttagcactctgacgctcaagtcagtaatggaactgaggaagagtttgtagaaagtgttgttaaaagtga 9867952  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 7486535 - 7486623
Alignment:
Q  114 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||| ||||||||||||| |||||  | ||||||   |||||||||||| ||||||| |||||| || ||||| ||||||||||    
T  7486535 gaaaggtgcatgcaggcacgttagcactccaacgctcaattcagtaatggaactgagaaagattgtgtagaaggtgttgtgaaaagtga 7486623  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 12265192 - 12265152
Alignment:
Q  115 aaaggtgcttgcaggcacgttaacactctgatgctcaaagt 155  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  12265192 aaaggtgcatgcaggcacgttaacactctgatgctcaaagt 12265152  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 9135465 - 9135374
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||| |  |||||||||| |||||| | ||||||   |||||||||| | |||||||||||||| ||| |||| ||||||||||    
T  9135465 aacgaaaggtgcatataggcacgttagcactctaacgctcaagtcagtaatggaattgagaaagagtgtgtaaaaactgttgtgaaaagtga 9135374  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 13159368 - 13159439
Alignment:
Q  119 gtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaaga-aagagtgtgtataaagtg 189  Q
    |||| |||||||||||||||||||  |||||||||  |||| ||||||||||| ||||||||||| ||||||    
T  13159368 gtgcctgcaggcacgttaacactccaatgctcaaatcagtattggaactaagagaagagtgtgtaaaaagtg 13159439  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 21161241 - 21161319
Alignment:
Q  124 tgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||||||| |||||  | ||||||   ||||||||| ||||||||| ||||||| |||||||| ||||||||||    
T  21161241 tgcaggcacgttagcactccaacgctcaagtcagtaatggagctaagaaagtgtgtgtagaaagtgttgtgaaaagtga 21161319  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 26763013 - 26762924
Alignment:
Q  113 cgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||| ||||||||||||||| |||||  | ||||||   ||||| |||||| | ||| |||||||| |||||||| ||||||||||    
T  26763013 cgaaaggttcttgcaggcacgttagcactccaacgctcaagtcagtaaaggaactcataaatagtgtgtagaaagtgttgtgaaaagtga 26762924  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 13292224 - 13292131
Alignment:
Q  114 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtgt 207  Q
    ||||||||  |||||| |||||| |||||| | ||||||   ||||||| |||| | ||||||||||||  ||||||| |||||||||| ||||    
T  13292224 gaaaggtgtctgcaggtacgttagcactctaacgctcaagtcagtaatgaaactgaaaaagagtgtgtaagaagtgttgtgaaaagtgatgtgt 13292131  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 12644772 - 12644852
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgtt 191  Q
    |||||||||||| |||||||| |||| ||||| || |||||    |||||||||||| ||||| |||||||  ||||||||    
T  12644772 aacgaaaggtgcatgcaggcaagttagcactccgacgctcaggtcagtaatggaactgagaaaaagtgtgtggaaagtgtt 12644852  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 16203768 - 16203800
Alignment:
Q  170 gaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||||||||||||| ||||||||||    
T  16203768 gaaagagtgtgtataaagtgttatgaaaagtga 16203800  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 22865748 - 22865844
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtgt 207  Q
    |||||||||||| |||||| |||||| |||| ||| ||||||  ||||||||||||| ||||| ||||||||  || |||| |||||||||| ||||    
T  22865748 aacgaaaggtgcatgcaggtacgttagcactttgacgctcaagttagtaatggaactgagaaaaagtgtgtaagaaatgttgtgaaaagtgatgtgt 22865844  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 8938899 - 8938978
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgt 190  Q
    |||||||||||| |||||||||||||||||||  |||||| |   |||| ||||||| |||||||||||||| |||||||    
T  8938899 aacgaaaggtgcatgcaggcacgttaacactccaatgctctagtcagtattggaactgagaaagagtgtgtaaaaagtgt 8938978  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 25537392 - 25537483
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||| |||| |||||||| |||||  | ||||||  | ||||||||||| ||||||| ||||||| ||||||| ||||||||||    
T  25537392 aacgaaaggtgcctgcaagcacgttagcactccaacgctcaagattgtaatggaactgagaaagattgtgtatgaagtgttgtgaaaagtga 25537483  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 22903125 - 22903171
Alignment:
Q  156 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||    
T  22903125 agtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 22903171  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 32418590 - 32418499
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||||| || ||||||||||| |||||||||| ||||||   | | |||||||  |||||||||||||| | |||||| |||| |||||    
T  32418590 aacgaaaggagcctgcaggcacgtcaacactctgacgctcaagtcactgatggaacagagaaagagtgtgtagagagtgttgtgaagagtga 32418499  T

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Target: scaffold0140 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 6289 - 6376
Alignment:
Q  115 aaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    ||||||| |||||||||||||| ||||  || ||||||   |||||||||||| ||||| |||||||| |||||||| ||||||||||    
T  6289 aaaggtgtttgcaggcacgttagcacttcgaagctcaagtcagtaatggaactgagaaatagtgtgtagaaagtgttgtgaaaagtga 6376  T

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Target: scaffold0074 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 35240 - 35327
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaa 198  Q
    ||||||| |||||||||||||||||| ||||||||  |||||   ||||| |||||| |||||||||||||  |||||||| ||||||    
T  35240 aacgaaatgtgcttgcaggcacgttagcactctgacactcaagtcagtaacggaactgagaaagagtgtgtggaaagtgttgtgaaaa 35327  T

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Target: scaffold0023 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 95910 - 95823
Alignment:
Q  115 aaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||| | ||||||||||||| ||||   | ||||||  ||||||||||||| |||||||||| ||| |||||||| ||||||||||    
T  95910 aaaggttcctgcaggcacgttaccacttcaacgctcaagttagtaatggaactgagaaagagtgcgtagaaagtgttgtgaaaagtga 95823  T

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Target: scaffold0263 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 20601 - 20505
Alignment:
Q  111 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtgt 207  Q
    |||||||||||||| ||  || |||| |||||||| ||||||   | ||| |||||| |||||||||||||| ||| |||| |||||||||| ||||    
T  20601 aacgaaaggtgcttacaaacatgttagcactctgacgctcaagtcactaaaggaactgagaaagagtgtgtagaaaatgttatgaaaagtgatgtgt 20505  T

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Target: scaffold0294 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 302 - 256
Alignment:
Q  156 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 202  Q
    |||||||||||| ||||||||||||||  ||||||| ||||||||||    
T  302 agtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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