View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16628_low_24 (Length: 222)
Name: NF16628_low_24
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16628_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 38898820 - 38898983
Alignment:
| Q |
21 |
actagtactactaaaattcatttctttcatttaagcttatggaagcaattttgtcaacctatattttataatttgaatattttagattcacgattagctt |
120 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38898820 |
actagtactactaaaatttatttctttcatttaagcttatggaagcaattttgtcaacctatattttataatttgaatattttagattcacgattagctt |
38898919 |
T |
|
| Q |
121 |
ccctctatataaagagtactcacataaatattctagcaagtagtacctgtcagaattatctacc |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38898920 |
ccctctatataaagagtactcacataaatattctagcaagtagtacctgtcataattatctacc |
38898983 |
T |
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Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 170
Target Start/End: Complemental strand, 38645689 - 38645543
Alignment:
| Q |
24 |
agtactactaaaattcatttctttcatttaagcttatggaagcaattttgtcaacctatattttataatttgaatattttagattcacgattagcttccc |
123 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||||||| | |
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| T |
38645689 |
agtactactaaaattaatttctttcatttaagcttgtggaagcaactttgtcaacctatattttatgatttgaataattcagattcacgattagcttctc |
38645590 |
T |
|
| Q |
124 |
tctatataaagagtactcacataaatattctagcaagtagtacctgt |
170 |
Q |
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|||||||| ||||||||||| | ||||| |||||||||||||||||| |
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| T |
38645589 |
tctatatagagagtactcacgtgaatatcctagcaagtagtacctgt |
38645543 |
T |
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