View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16628_low_3 (Length: 540)
Name: NF16628_low_3
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16628_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 16 - 521
Target Start/End: Complemental strand, 25743150 - 25742647
Alignment:
| Q |
16 |
atgaacttgaacacacaaacaacaaccttaaacatacctaagatgttggacaagcaaataacacaatccatatataaacatcaattgacaaaataaactc |
115 |
Q |
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| T |
25743150 |
atgaacttgaacacacaaacaacaaccttaaacatacctaagatgttggacaagcaaataacacaatccatatataa-catcaattgacaaaataaactc |
25743052 |
T |
|
| Q |
116 |
atatacatagtttcgacaaatgaaagaattcatacacacttgaataaaattaaaattgcaaatgatgataaattaatagatagagtctatgaagcacaga |
215 |
Q |
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| T |
25743051 |
atatacatagtttcgaaaaatgaaagaattcatacacacttgaataaaattaaaattgcaaatgatgataaattaatagatagagtctatgaagcacaga |
25742952 |
T |
|
| Q |
216 |
cacaagtacgtataattcaatgtaattgtatgtgtcggtatcggatagagttaaaggaacgtacatagcagcaacagcagcaaagaatccgaagaaagaa |
315 |
Q |
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| T |
25742951 |
cagaagtacgtataattcaatgtaattatatgtgtcggtatcggatagagttaaaggaacgtacatagcagcaacagcagcaaagaatccgaagaaagaa |
25742852 |
T |
|
| Q |
316 |
gctccaaagccgcctgcaccagctaatttgatggcatgattagcgagtttactagcagcttcactcaggtctttgaaatctgagttcataatctgaactg |
415 |
Q |
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| T |
25742851 |
gctccaaagccgcctacaccagctaatttgatggcatgattagcgagtttactagcagcttcactcaggtctttgaaatctgagttcataatctgaactg |
25742752 |
T |
|
| Q |
416 |
cttcttcttgaacattctttctgttccacattttctactgatcaagaaagaacaaaataaacaacgatgaaatatctaggactgtgcagtgtatgagctg |
515 |
Q |
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| T |
25742751 |
cttcttcttgaaaattcattctgttccacattttctactgatcaagaaa-aacaaaataaacaacgatgaaatatctaggactgtgcagtgtatgagctg |
25742653 |
T |
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| Q |
516 |
gtatat |
521 |
Q |
| |
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|||||| |
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| T |
25742652 |
gtatat |
25742647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 166 - 476
Target Start/End: Complemental strand, 25739430 - 25739131
Alignment:
| Q |
166 |
taaaattgcaaatgatgataaattaatagatagagtctatgaagcacagacacaagtacgtataattcaatgtaattgtatgtgtcggtatcggatagag |
265 |
Q |
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|||||| | |||||||||||||||||||||||||| ||||||||||| ||| || | | | |||||||| ||| ||||||| |||||||||| |
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| T |
25739430 |
taaaatggtaaatgatgataaattaatagatagagcctatgaagcac-gactcagg--------acacgatgtaattatatatgtcggtgtcggatagag |
25739340 |
T |
|
| Q |
266 |
ttaaagg-aacgtacatagcagcaacagcagcaaagaatccgaagaaagaagctccaaagccgcctgcaccagctaatttgatggcatgattagcgagtt |
364 |
Q |
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| T |
25739339 |
ttaaaggtaacgtacatagcagcaacagcagcaaagaatccaaagaaagaacctcc---ccagcctataccagcgaatttgatggcatgattagcgagtc |
25739243 |
T |
|
| Q |
365 |
tactagcagcttcactcaggtctttgaaatctgagttcataatctgaactgcttcttcttgaacattctttctgttccacattttctactgatcaagaaa |
464 |
Q |
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| T |
25739242 |
tgctagcaacttcactcaggtctttgaaatctgagttcataacctgaactgcttcttcttgaaaattcattttgttccacattttctattgatcaagaaa |
25739143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 25739540 - 25739493
Alignment:
| Q |
20 |
acttgaacacacaaacaacaaccttaaacatacctaagatgttggaca |
67 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25739540 |
actttaacacacaaacaacaaccttaaacatacctacgatgttggaca |
25739493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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