View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16628_low_4 (Length: 527)
Name: NF16628_low_4
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16628_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 510
Target Start/End: Original strand, 32179190 - 32179709
Alignment:
| Q |
5 |
gtaaaatagtatagttatctccacccnnnnnnnngttgtagcaagatattggattcttgatgtaag---ggtacattaaatattttcaacttgattaca- |
100 |
Q |
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| T |
32179190 |
gtaaaatagtatagttatctccgcccaaaaaaaagttgtagcaaggtattggattcttgatgtaagaagggtccattaaatatctttaacatgattacag |
32179289 |
T |
|
| Q |
101 |
---------taacgagcttcatnnnnnnntgaattgtctgagggaatttaaattcgattatgtatgaaagaattcttgatcagatttacttacatctgag |
191 |
Q |
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||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
32179290 |
ttaagtgattaacgagcttcataaaaaaataaattgtctgagggaatttaa-ttcgattatgtgtgaaagaattcttgatcagatttacttacctctgac |
32179388 |
T |
|
| Q |
192 |
ttccggattactagaactatctcctcaatgaattagagtgttagcacnnnnnnnnttacgtatcggttaattattta---tcaatttgtttcataatgtt |
288 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| || ||||||||||||||| | |
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| T |
32179389 |
ctccggattactagaactatcttctcaatgaattagagtgttagcacaaaaaaaattacatatcggttaattatttagtatctatttgtttcataatgat |
32179488 |
T |
|
| Q |
289 |
cgttttttaaagagttccataataatcgttatatttgtnnnnnnnnnnnnnnnnnnnnnnnnntattattactttaaattttcaaggtaatttcaattac |
388 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |
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| T |
32179489 |
cgttttttaaagagttccataattatcgttatatttgtaaaagataaaaaattatctaaaaaatattattactttaaactttcaaggtaatt-caattac |
32179587 |
T |
|
| Q |
389 |
tttaaactctacctaatgtcatttgcatctctctaatgtcattattttctattatgcatttataataatgaaaaaacatcaatagtttgttataaataat |
488 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32179588 |
tttaaactctacctaatgtcatttgcacctctctaatgttattattttctattatgcatttataataatgaaaaaacatcaatagtttgttataaataat |
32179687 |
T |
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| Q |
489 |
tgagcaaaatcaacgaggtaaa |
510 |
Q |
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||||||||||||| |||||||| |
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| T |
32179688 |
tgagcaaaatcaatgaggtaaa |
32179709 |
T |
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