View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16628_low_5 (Length: 519)
Name: NF16628_low_5
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16628_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 464
Target Start/End: Complemental strand, 27441398 - 27440939
Alignment:
| Q |
8 |
agtagcataggaagcagcatagttcacgctacacttgtgttttctattttgattgaacaataaaattgtaaggcacaagacaatgtatacttttgtctta |
107 |
Q |
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| T |
27441398 |
agtaacataggaagcagcatagttcacgctacaattgtgttttctattttgattgaacaataaaattgtaaggcacaagacaatgtatacttttgtctta |
27441299 |
T |
|
| Q |
108 |
ttcacttctagtaactagtggtaatgaattgattgcacctcataacctacatgaatggaaatgagatattgagttttcaatagatttatgattgtttgtc |
207 |
Q |
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| T |
27441298 |
ttcacttctagtaactagtggtaatgaattgattgcacctcataacctacatgaatggaaatgagatattgagttttcaatagatttatgattgtttgtc |
27441199 |
T |
|
| Q |
208 |
taaatatataccagcatcttcaagtataaacatgtgctaacgtgatttagatgttcccaacatggttttgaacgtggaaaataattatttgatttcttgt |
307 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27441198 |
taaatataaaccagcatcttcaagtataaacatgtgctaacgtgatttagatgttcccaacatggttttgaacatggaaaataattatttgatttcttgt |
27441099 |
T |
|
| Q |
308 |
gttttcaaatttatataatttgttaaggacaaatatcatgtgctaaac---nnnnnnnnngaaaattcagcactaaacaatacgttttattcgcatagaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| |
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| T |
27441098 |
gttttcaaatttatataatttgttaaggacaaatatcatgtgctaaacaaaaaaaaaaattaaaattcagcactaaacaatacgtttgattcgtatagaa |
27440999 |
T |
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| Q |
405 |
nnnnnnnggatcttctaaaataattatccaccatttgcatggattaatgcattaaaataa |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27440998 |
tttttttggatcttctaaaataattatccaccatttgcatggattaatgcattaaaataa |
27440939 |
T |
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