View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16628_low_8 (Length: 438)

Name: NF16628_low_8
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16628_low_8
NF16628_low_8
[»] chr2 (3 HSPs)
chr2 (19-272)||(1905342-1905594)
chr2 (303-438)||(1905205-1905343)
chr2 (366-438)||(13080193-13080265)
[»] chr3 (4 HSPs)
chr3 (364-438)||(41235442-41235516)
chr3 (367-438)||(44554359-44554430)
chr3 (367-436)||(47086169-47086238)
chr3 (367-435)||(47085611-47085679)
[»] chr8 (4 HSPs)
chr8 (357-438)||(39739566-39739647)
chr8 (366-438)||(32612103-32612175)
chr8 (367-438)||(39742397-39742468)
chr8 (367-438)||(37695390-37695461)
[»] chr7 (1 HSPs)
chr7 (367-438)||(39796614-39796685)
[»] chr4 (4 HSPs)
chr4 (367-438)||(37198059-37198130)
chr4 (367-438)||(49321631-49321702)
chr4 (367-438)||(50344360-50344431)
chr4 (367-438)||(50344518-50344589)
[»] chr1 (1 HSPs)
chr1 (367-438)||(27520611-27520682)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 1905594 - 1905342
Alignment:
Q  19 ctttgattgggggaatgagccatctagtacctttactaccnnnnnnncatagtatctaattattggcttcatatttggggtcagctatgaccaagtgata 118  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1905594 ctttgattgggggaatgagccatctagtacctttactacctttttttcatagtatctaattattggcttcatatttggggtcagctatgaccaagtgata 1905495  T
Q  119 tgcgacaaccaacgcaaaaatgaagatgccatgccaagatagtttggcaatgaatcccaagccttc----atcatcaatcatctttttcttcttcttctt 214  Q
    |||||||||||||||||||||||||||||||     |||||||||||| |||||||||||||||||    ||||||||||||||||||||||||||||||    
T  1905494 tgcgacaaccaacgcaaaaatgaagatgcca-----agatagtttggccatgaatcccaagccttccttcatcatcaatcatctttttcttcttcttctt 1905400  T
Q  215 ccaggtggcaatcaaatctacctatcattaaaataacagaatcaaaatgcaatgcgga 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1905399 ccaggtggcaatcaaatctacctatcattaaaataacagaatcaaaatgcaatgcgga 1905342  T

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Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 303 - 438
Target Start/End: Complemental strand, 1905343 - 1905205
Alignment:
Q  303 gaaacaataatactaatcataactgaatataacaagcgatgaataaaaaaggtaaaaa-gagaagtgtg--gctgctgggattcgagcccaggtctccac 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||    
T  1905343 gaaacaataatactaatcataactgaatataacaagcgatgaataaaaaaggtaaaaaagagaagtgtgtggctgctgggattcgagcccaggtctccac 1905244  T
Q  400 ggccacaacgtggaattcttaccactaaactacagccac 438  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1905243 ggccacaacgtggaattcttaccactaaactacagccac 1905205  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 366 - 438
Target Start/End: Original strand, 13080193 - 13080265
Alignment:
Q  366 gtgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13080193 gtgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattctcaccactaaactacagccac 13080265  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 364 - 438
Target Start/End: Original strand, 41235442 - 41235516
Alignment:
Q  364 aagtgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41235442 aagtgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 41235516  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 367 - 438
Target Start/End: Original strand, 44554359 - 44554430
Alignment:
Q  367 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44554359 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 44554430  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 367 - 436
Target Start/End: Original strand, 47086169 - 47086238
Alignment:
Q  367 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagcc 436  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47086169 tgtgggtgctgggattcaagcccaggtctccacagccacaacgtggaattcttaccactaaactacagcc 47086238  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 367 - 435
Target Start/End: Original strand, 47085611 - 47085679
Alignment:
Q  367 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagc 435  Q
    |||||||||| ||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||    
T  47085611 tgtggctgcttggattcgagcccaggtctcctgggccacaatgtggaattcttaccactaaactacagc 47085679  T

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Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 357 - 438
Target Start/End: Original strand, 39739566 - 39739647
Alignment:
Q  357 aaaagagaagtgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 438  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39739566 aaaaaagaattgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 39739647  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 366 - 438
Target Start/End: Original strand, 32612103 - 32612175
Alignment:
Q  366 gtgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32612103 gtgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 32612175  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 367 - 438
Target Start/End: Original strand, 39742397 - 39742468
Alignment:
Q  367 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39742397 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 39742468  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 367 - 438
Target Start/End: Original strand, 37695390 - 37695461
Alignment:
Q  367 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37695390 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattctaaccactaaactacagccac 37695461  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 367 - 438
Target Start/End: Original strand, 39796614 - 39796685
Alignment:
Q  367 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39796614 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 39796685  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 367 - 438
Target Start/End: Original strand, 37198059 - 37198130
Alignment:
Q  367 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37198059 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 37198130  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 367 - 438
Target Start/End: Complemental strand, 49321702 - 49321631
Alignment:
Q  367 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49321702 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 49321631  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 367 - 438
Target Start/End: Original strand, 50344360 - 50344431
Alignment:
Q  367 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50344360 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 50344431  T

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Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 367 - 438
Target Start/End: Original strand, 50344518 - 50344589
Alignment:
Q  367 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  50344518 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattctcaccactaaactacagccac 50344589  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 367 - 438
Target Start/End: Complemental strand, 27520682 - 27520611
Alignment:
Q  367 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27520682 tgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagccac 27520611  T

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